Update index.md

poursalavati · Sep 7, 2023 · 00b114d · 00b114d
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@@ -126,9 +126,11 @@ Example command - 2 (NCBI database + DIAMOND-MEGAN):
 python ./Run_SOVAP.py -r1 Virome_R1_001.fastq.gz -r2 Virome_R2_001.fastq.gz -t 25 -x centrifuge/p_compressed/p_compressed -g genomad_db/ -d Diamond/DIAMOND_viral_database_GB.dmnd -md megan-map/megan-map-Feb2022.db --megan --end_to_end
 ```
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 ## Running the Pipeline - Batch Mode
 
 Batch mode in SOVAP allows for efficient analysis of large datasets by running the pipeline on multiple paired-end fastq files.