Apply new tutorials conventions on Turek Hron FSI3 case (#130)

* Rename all tutorial cases according to new naming scheme

* Adjust FSI3 case to new conventions (flat hierarchy, names, etc)

* Delete dealii executable and add it to gitignore

* Add statement in FSI Readme that 25 parallel ranks are used

* Remove false comment in FSI3 readme

* Extend statement on swak4Foam for FSI3 case

* Move removeObsoleteSolvers remark to pp section in FSI3 readme

* Apply some cosmetics to FSI3 readme

* Update turek-hron-fsi3/README.md

Co-authored-by: Gerasimos Chourdakis <[email protected]>

* Add more information on solid run script to FSI3 readme

* Update turek-hron-fsi3/README.md

Co-authored-by: Gerasimos Chourdakis <[email protected]>

* Split pp section into multiple paragraphs, FSI3 readme

* Add extrapolation to FSI3 case again

* Add section on mesh refinement to FSI3 readme

* Change watchpoint name to conventions, FSI3 case

* Add figures according to the default coarse mesh

* Update turek-hron-fsi3/README.md

Co-authored-by: Gerasimos Chourdakis <[email protected]>

* Update turek-hron-fsi3/README.md

Co-authored-by: Gerasimos Chourdakis <[email protected]>

* Update turek-hron-fsi3/README.md

Co-authored-by: Gerasimos Chourdakis <[email protected]>

* Add some explanation how to use the refined meshes for FSI3

* Remove OpenFOAM keyword scale from all FSI3 meshes

Co-authored-by: Gerasimos Chourdakis <[email protected]>
Co-authored-by: DavidSCN <[email protected]>

turek-hron-fsi3/.gitignore

@@ -0,0 +1 @@
+solid-dealii/nonlinear_elasticity

turek-hron-fsi3/OpenFOAM-deal.II/Allclean → turek-hron-fsi3/Allclean

@@ -8,50 +8,44 @@ echo "Cleaning..."
 
 # Participant 1: Fluid (OpenFOAM)
 Participant1="Fluid"
-cd ${Participant1}
+cd fluid-openfoam
     # Clean the case
     cleanCase
     rm -rfv 0
     # Create an empty .foam file for ParaView
     # Note: ".foam" triggers the native OpenFOAM reader of ParaView.
     # Change to ".OpenFOAM" to use the OpenFOAM reader provided with OpenFOAM.
     touch ${Participant1}.foam
+
+    # Remove the log files
+    rm -fv ${Participant1}_blockMesh.log
+    rm -fv ${Participant1}_checkMesh.log
+    rm -fv ${Participant1}_decomposePar.log
+    rm -fv ${Participant1}.log
+    rm -fv ${Participant1}_reconstructPar.log
+
+    # Remove the preCICE-related log files
+    rm -fv \
+    precice-*.log \
+    precice-*-events.json
+
 cd ..
-# Remove the log files
-rm -fv ${Participant1}_blockMesh.log
-rm -fv ${Participant1}_checkMesh.log
-rm -fv ${Participant1}_decomposePar.log
-rm -fv ${Participant1}.log
-rm -fv ${Participant1}_reconstructPar.log
 
 # Participant 2: Solid (deal.II)
 Participant2="Solid"
-cd  ./Solid/dealii_output
+cd  solid-dealii
     # Clean the case
     echo "Cleaning Solid case"
     rm -fv solution-*.vtk
-cd .. 
-    rm -fv solution-*.vtk
-cd ..
-
-# Remove the log files
-rm -fv ${Participant2}.log
-
-# Remove the preCICE-related log files
-echo "Deleting the preCICE log files..."
-rm -fv \
+
+    # Remove the preCICE-related log files
+    rm -fv \
     precice-*.log \
     precice-*-events.json
 
-# Output files for preCICE versions before 1.2:
-rm -fv \
-    iterations-${Participant1}.txt iterations-${Participant2}.txt \
-    convergence-${Participant1}.txt convergence-${Participant2}.txt \
-    Events-${Participant1}.log Events-${Participant2}.log \
-    EventTimings-${Participant1}.log EventTimings-${Participant2}.log
+cd ..
 
 rm -rfv precice-run
-rm -fv .${Participant1}-${Participant2}.address
 
 echo "Cleaning complete!"
 #------------------------------------------------------------------------------