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Update Dockerfile Julia 1.3.1->1.5.3 #62

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Merged
merged 7 commits into from
Mar 12, 2021
Merged

Update Dockerfile Julia 1.3.1->1.5.3 #62

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2d3e1c9
Update Dockerfile
postylem Feb 23, 2021
6767ade
Merge pull request #1 from postylem/postylem-update_to_julia_1.5
postylem Feb 23, 2021
fe5f227
parametrize julia version
postylem Feb 23, 2021
ee3198f
parametrize julia version for 20.04
postylem Feb 23, 2021
db4fc2b
TF now supports python 3.8
postylem Feb 23, 2021
a245527
added PyTorch install in Ubuntu 20.04 Dockerfile
postylem Feb 27, 2021
ba9f734
chaining with && for slightly fewer RUN commands
postylem Mar 7, 2021
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15 changes: 12 additions & 3 deletions Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -17,9 +17,18 @@ RUN git config --global user.email "[email protected]"
RUN virtualenv -p /usr/bin/python3 /venv
RUN . /venv/bin/activate && pip install jupyter jupytext matplotlib tensorflow torch

RUN wget https://julialang-s3.julialang.org/bin/linux/x64/1.3/julia-1.3.1-linux-x86_64.tar.gz
RUN tar -xzv < julia-1.3.1-linux-x86_64.tar.gz
RUN ln -s /julia-1.3.1/bin/julia /usr/bin/julia
# Specify Julia version. Find current version on https://julialang.org/downloads/
ARG JULIA_VERSION_SHORT="1.5"
ARG JULIA_VERSION_FULL="${JULIA_VERSION_SHORT}.3"
ENV JULIA_INSTALLATION_PATH=/opt/julia

RUN wget https://julialang-s3.julialang.org/bin/linux/x64/${JULIA_VERSION_SHORT}/julia-${JULIA_VERSION_FULL}-linux-x86_64.tar.gz && \
tar zxf julia-${JULIA_VERSION_FULL}-linux-x86_64.tar.gz && \
mkdir -p "${JULIA_INSTALLATION_PATH}" && \
mv julia-${JULIA_VERSION_FULL} "${JULIA_INSTALLATION_PATH}/" && \
ln -fs "${JULIA_INSTALLATION_PATH}/julia-${JULIA_VERSION_FULL}/bin/julia" /usr/local/bin/ && \
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why /usr/local/bin rather than /usr/bin? (answer might be "the convention is pretty vague anyway," just wondering)

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@postylem postylem Feb 23, 2021 •
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just because @fplk suggested it :) do you have a preference?

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/usr/bin is for distribution-managed binaries.

rm julia-${JULIA_VERSION_FULL}-linux-x86_64.tar.gz && \
julia -e 'import Pkg; Pkg.add("IJulia")'

ADD . /gen-quickstart
ENV JULIA_PROJECT=/gen-quickstart
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32 changes: 17 additions & 15 deletions Dockerfile.ubuntu-2004
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Expand Up @@ -4,7 +4,8 @@ MAINTAINER MIT Probabilistic Computing Project
# Avoid tzdata configuration dialog
ENV DEBIAN_FRONTEND=noninteractive

RUN apt update -qq && apt install -qq -y \
RUN apt-get update -qq && \
apt-get install -qq -y \
hdf5-tools \
git \
python3-dev \
Expand All @@ -14,23 +15,24 @@ RUN apt update -qq && apt install -qq -y \
zlib1g-dev && \
rm -rf /var/lib/apt/lists/*

# Since Tensorflow only supports Python up to 3.7 and not 3.8 (default in 20.04) instead of tensorflow or tf-nightly-cpu we use
# Tensorflow wheel files from https://pypi.org/project/tf-nightly/2.2.0.dev20200307/#files
RUN wget https://files.pythonhosted.org/packages/30/8e/650b282491e126a39e2b256f1ad790d566c53465dfd801a7703e421431e3/tf_nightly-2.2.0.dev20200307-cp38-cp38-manylinux2010_x86_64.whl && \
python3 -m pip install --upgrade pip && \
python3 -m pip install tf_nightly-2.2.0.dev20200307-cp38-cp38-manylinux2010_x86_64.whl && \
rm tf_nightly-2.2.0.dev20200307-cp38-cp38-manylinux2010_x86_64.whl
RUN git config --global user.name "Gen User" && \
git config --global user.email "[email protected]"

RUN git config --global user.name "Gen User"
RUN git config --global user.email "[email protected]"
RUN python3 -m pip install --upgrade pip && \
python3 -m pip install jupyter jupytext matplotlib tensorflow torch

# Could use virtual environment - "RUN virtualenv -p /usr/bin/python3 /venv" and ". /venv/bin/activate" && in front of pip and julia commands
RUN python3 -m pip install jupyter jupytext matplotlib
# Specify Julia version. Find current version on https://julialang.org/downloads/
ARG JULIA_VERSION_SHORT="1.5"
ARG JULIA_VERSION_FULL="${JULIA_VERSION_SHORT}.3"
ENV JULIA_INSTALLATION_PATH=/opt/julia

RUN wget https://julialang-s3.julialang.org/bin/linux/x64/1.3/julia-1.3.1-linux-x86_64.tar.gz && \
tar -xzv < julia-1.3.1-linux-x86_64.tar.gz && \
ln -s /julia-1.3.1/bin/julia /usr/bin/julia && \
rm julia-1.3.1-linux-x86_64.tar.gz
RUN wget https://julialang-s3.julialang.org/bin/linux/x64/${JULIA_VERSION_SHORT}/julia-${JULIA_VERSION_FULL}-linux-x86_64.tar.gz && \
tar zxf julia-${JULIA_VERSION_FULL}-linux-x86_64.tar.gz && \
mkdir -p "${JULIA_INSTALLATION_PATH}" && \
mv julia-${JULIA_VERSION_FULL} "${JULIA_INSTALLATION_PATH}/" && \
ln -fs "${JULIA_INSTALLATION_PATH}/julia-${JULIA_VERSION_FULL}/bin/julia" /usr/local/bin/ && \
rm julia-${JULIA_VERSION_FULL}-linux-x86_64.tar.gz && \
julia -e 'import Pkg; Pkg.add("IJulia")'

ADD . /gen-quickstart
ENV JULIA_PROJECT=/gen-quickstart
Expand Down