-
Notifications
You must be signed in to change notification settings - Fork 8
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
* Disable PSM3 in CI pipelines * Fix filepaths and variable names * Python best coding practices Address pylint rules W0611, W0102, W1401, E1120, C0121, C0123, C0325, R0124, R1714. * Fix f-strings and incorrect indentation levels Address pylint rules W0311, W1309. * Add pylint * Rewrite serialization code with safer alternatives Address Pylint rules W0123, R1722. * fix sample script * fix bug when standarizing data from Landgesell * fix bug in peptide section of the tutorial * clean-up output from tutorials * Allow custom Python executables * Comply with output directory flag from argparse * fix on running globular_protein script * Fix exit strategy * remove not plot condition * Fix unit system * remove code repetition in standarize_data.py --------- Co-authored-by: blancoapa <[email protected]> Co-authored-by: blancoapa <[email protected]> Co-authored-by: Pao <[email protected]>
- Loading branch information
1 parent
d10d172
commit 9b6cc37
Showing
38 changed files
with
784 additions
and
1,417 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,45 @@ | ||
[MESSAGES CONTROL] | ||
|
||
# Only show warnings with the listed confidence levels. Leave empty to show | ||
# all. Valid levels: HIGH, INFERENCE, INFERENCE_FAILURE, UNDEFINED. | ||
confidence= | ||
|
||
# Disable the message, report, category or checker with the given id(s). You | ||
# can either give multiple identifiers separated by comma (,) or put this | ||
# option multiple times (only on the command line, not in the configuration | ||
# file where it should appear only once). You can also use "--disable=all" to | ||
# disable everything first and then reenable specific checks. For example, if | ||
# you want to run only the similarities checker, you can use "--disable=all | ||
# --enable=similarities". If you want to run only the classes checker, but have | ||
# no Warning level messages displayed, use "--disable=all --enable=classes | ||
# --disable=W". | ||
disable=all | ||
|
||
# Enable the message, report, category or checker with the given id(s). You can | ||
# either give multiple identifier separated by comma (,) or put this option | ||
# multiple time (only on the command line, not in the configuration file where | ||
# it should appear only once). See also the "--disable" option for examples. | ||
enable=dangerous-default-value, # W0102 | ||
duplicate-key, # W0109 | ||
eval-used, # W0123 | ||
assert-on-tuple, # W0199 | ||
bad-indentation, # W0311 | ||
wildcard-import, # W0401 | ||
unused-import, # W0611 | ||
unused-variable, # W0612 | ||
unused-argument, # W0613 | ||
unused-wildcard-import, # W0614 | ||
f-string-without-interpolation, # W1309 | ||
anomalous-backslash-in-string, # W1401 | ||
deprecated-method, # W1505 | ||
comparison-with-itself, # R0124 | ||
cyclic-import, # R0401 | ||
trailing-comma-tuple, # R1707 | ||
consider-using-in, # R1714 | ||
consider-using-sys-exit, # R1722 | ||
singleton-comparison, # C0121 | ||
unidiomatic-typecheck, # C0123 | ||
bad-classmethod-argument, # C0202 | ||
superfluous-parens, # C0325 | ||
undefined-variable, # E0602 | ||
no-value-for-parameter, # E1120 |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.