Deploying to gh-pages from @ 6953d62 🚀

pylhc · Jul 10, 2024 · b98f06e · b98f06e
1 parent 51dc08e
commit b98f06e
Show file tree

Hide file tree

Showing 104 changed files with 420 additions and 341 deletions.
diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 74faf1ece4c7094eae20373cbc46ce0d
+config: f69d78534b8d73ccbf329ad4588350ae
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/_modules/index.html b/_modules/index.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Overview: module code &mdash; omc3 0.14.1 documentation</title>
+  <title>Overview: module code &mdash; omc3 0.15.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
       <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=19f00094" />
       <link rel="stylesheet" type="text/css" href="../_static/css/custom.css?v=449bdd91" />
@@ -15,7 +15,7 @@
 
         <script src="../_static/jquery.js?v=5d32c60e"></script>
         <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../_static/documentation_options.js?v=3a3a8e7f"></script>
+        <script src="../_static/documentation_options.js?v=ef97403f"></script>
         <script src="../_static/doctools.js?v=9a2dae69"></script>
         <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/js/theme.js"></script>

diff --git a/_modules/omc3/amplitude_detuning_analysis.html b/_modules/omc3/amplitude_detuning_analysis.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>omc3.amplitude_detuning_analysis &mdash; omc3 0.14.1 documentation</title>
+  <title>omc3.amplitude_detuning_analysis &mdash; omc3 0.15.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
       <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=19f00094" />
       <link rel="stylesheet" type="text/css" href="../../_static/css/custom.css?v=449bdd91" />
@@ -15,7 +15,7 @@
 
         <script src="../../_static/jquery.js?v=5d32c60e"></script>
         <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../_static/documentation_options.js?v=3a3a8e7f"></script>
+        <script src="../../_static/documentation_options.js?v=ef97403f"></script>
         <script src="../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>

diff --git a/_modules/omc3/check_corrections.html b/_modules/omc3/check_corrections.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>omc3.check_corrections &mdash; omc3 0.14.1 documentation</title>
+  <title>omc3.check_corrections &mdash; omc3 0.15.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
       <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=19f00094" />
       <link rel="stylesheet" type="text/css" href="../../_static/css/custom.css?v=449bdd91" />
@@ -15,7 +15,7 @@
 
         <script src="../../_static/jquery.js?v=5d32c60e"></script>
         <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../_static/documentation_options.js?v=3a3a8e7f"></script>
+        <script src="../../_static/documentation_options.js?v=ef97403f"></script>
         <script src="../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>

diff --git a/_modules/omc3/correction/filters.html b/_modules/omc3/correction/filters.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>omc3.correction.filters &mdash; omc3 0.14.1 documentation</title>
+  <title>omc3.correction.filters &mdash; omc3 0.15.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=19f00094" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/custom.css?v=449bdd91" />
@@ -15,7 +15,7 @@
 
         <script src="../../../_static/jquery.js?v=5d32c60e"></script>
         <script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../../_static/documentation_options.js?v=3a3a8e7f"></script>
+        <script src="../../../_static/documentation_options.js?v=ef97403f"></script>
         <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>

diff --git a/_modules/omc3/correction/handler.html b/_modules/omc3/correction/handler.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>omc3.correction.handler &mdash; omc3 0.14.1 documentation</title>
+  <title>omc3.correction.handler &mdash; omc3 0.15.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=19f00094" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/custom.css?v=449bdd91" />
@@ -15,7 +15,7 @@
 
         <script src="../../../_static/jquery.js?v=5d32c60e"></script>
         <script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../../_static/documentation_options.js?v=3a3a8e7f"></script>
+        <script src="../../../_static/documentation_options.js?v=ef97403f"></script>
         <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>

diff --git a/_modules/omc3/correction/model_appenders.html b/_modules/omc3/correction/model_appenders.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>omc3.correction.model_appenders &mdash; omc3 0.14.1 documentation</title>
+  <title>omc3.correction.model_appenders &mdash; omc3 0.15.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=19f00094" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/custom.css?v=449bdd91" />
@@ -15,7 +15,7 @@
 
         <script src="../../../_static/jquery.js?v=5d32c60e"></script>
         <script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../../_static/documentation_options.js?v=3a3a8e7f"></script>
+        <script src="../../../_static/documentation_options.js?v=ef97403f"></script>
         <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>

diff --git a/_modules/omc3/correction/model_diff.html b/_modules/omc3/correction/model_diff.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>omc3.correction.model_diff &mdash; omc3 0.14.1 documentation</title>
+  <title>omc3.correction.model_diff &mdash; omc3 0.15.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=19f00094" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/custom.css?v=449bdd91" />
@@ -15,7 +15,7 @@
 
         <script src="../../../_static/jquery.js?v=5d32c60e"></script>
         <script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../../_static/documentation_options.js?v=3a3a8e7f"></script>
+        <script src="../../../_static/documentation_options.js?v=ef97403f"></script>
         <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>

diff --git a/_modules/omc3/correction/response_io.html b/_modules/omc3/correction/response_io.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>omc3.correction.response_io &mdash; omc3 0.14.1 documentation</title>
+  <title>omc3.correction.response_io &mdash; omc3 0.15.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=19f00094" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/custom.css?v=449bdd91" />
@@ -15,7 +15,7 @@
 
         <script src="../../../_static/jquery.js?v=5d32c60e"></script>
         <script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../../_static/documentation_options.js?v=3a3a8e7f"></script>
+        <script src="../../../_static/documentation_options.js?v=ef97403f"></script>
         <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>

diff --git a/_modules/omc3/correction/response_madx.html b/_modules/omc3/correction/response_madx.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>omc3.correction.response_madx &mdash; omc3 0.14.1 documentation</title>
+  <title>omc3.correction.response_madx &mdash; omc3 0.15.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=19f00094" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/custom.css?v=449bdd91" />
@@ -15,7 +15,7 @@
 
         <script src="../../../_static/jquery.js?v=5d32c60e"></script>
         <script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../../_static/documentation_options.js?v=3a3a8e7f"></script>
+        <script src="../../../_static/documentation_options.js?v=ef97403f"></script>
         <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>
@@ -228,6 +228,7 @@ <h1>Source code for omc3.correction.response_madx</h1><div class="highlight"><pr
 <span class="kn">from</span> <span class="nn">typing</span> <span class="kn">import</span> <span class="n">Dict</span><span class="p">,</span> <span class="n">Sequence</span><span class="p">,</span> <span class="n">Tuple</span><span class="p">,</span> <span class="n">List</span>
 
 <span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+<span class="kn">import</span> <span class="nn">zipfile</span>
 <span class="kn">import</span> <span class="nn">pandas</span> <span class="k">as</span> <span class="nn">pd</span>
 <span class="kn">import</span> <span class="nn">tfs</span>
 <span class="kn">from</span> <span class="nn">optics_functions.coupling</span> <span class="kn">import</span> <span class="n">coupling_via_cmatrix</span>
@@ -352,9 +353,16 @@ <h1>Source code for omc3.correction.response_madx</h1><div class="highlight"><pr
         <span class="n">log_path</span> <span class="o">=</span> <span class="n">job_path</span><span class="o">.</span><span class="n">with_name</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">job_path</span><span class="o">.</span><span class="n">name</span><span class="si">}</span><span class="s2">.log&quot;</span><span class="p">)</span>
         <span class="n">full_log</span> <span class="o">+=</span> <span class="n">log_path</span><span class="o">.</span><span class="n">read_text</span><span class="p">()</span>
         <span class="n">log_path</span><span class="o">.</span><span class="n">unlink</span><span class="p">()</span>
-        <span class="n">job_path</span><span class="o">.</span><span class="n">unlink</span><span class="p">()</span>
-    <span class="n">full_log_path</span> <span class="o">=</span> <span class="n">temp_dir</span> <span class="o">/</span> <span class="s2">&quot;response_madx_full.log&quot;</span>
-    <span class="n">full_log_path</span><span class="o">.</span><span class="n">write_text</span><span class="p">(</span><span class="n">full_log</span><span class="p">)</span>
+        <span class="k">if</span> <span class="n">index</span><span class="p">:</span>  <span class="c1"># keep 0th for reference</span>
+            <span class="n">job_path</span><span class="o">.</span><span class="n">unlink</span><span class="p">()</span>
+
+    <span class="c1"># write compressed full log file</span>
+    <span class="n">full_log_name</span> <span class="o">=</span> <span class="s2">&quot;response_madx_full.log&quot;</span>
+    <span class="n">zipfile</span><span class="o">.</span><span class="n">ZipFile</span><span class="p">(</span>
+        <span class="n">temp_dir</span> <span class="o">/</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">full_log_name</span><span class="si">}</span><span class="s2">.zip&quot;</span><span class="p">,</span> 
+        <span class="n">mode</span><span class="o">=</span><span class="s2">&quot;w&quot;</span><span class="p">,</span> 
+        <span class="n">compression</span><span class="o">=</span><span class="n">zipfile</span><span class="o">.</span><span class="n">ZIP_DEFLATED</span>
+    <span class="p">)</span><span class="o">.</span><span class="n">writestr</span><span class="p">(</span><span class="n">full_log_name</span><span class="p">,</span> <span class="n">full_log</span><span class="p">)</span>
 
 
 <span class="k">def</span> <span class="nf">_load_madx_results</span><span class="p">(</span>

diff --git a/_modules/omc3/correction/response_twiss.html b/_modules/omc3/correction/response_twiss.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>omc3.correction.response_twiss &mdash; omc3 0.14.1 documentation</title>
+  <title>omc3.correction.response_twiss &mdash; omc3 0.15.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=19f00094" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/custom.css?v=449bdd91" />
@@ -15,7 +15,7 @@
 
         <script src="../../../_static/jquery.js?v=5d32c60e"></script>
         <script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../../_static/documentation_options.js?v=3a3a8e7f"></script>
+        <script src="../../../_static/documentation_options.js?v=ef97403f"></script>
         <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>

diff --git a/_modules/omc3/correction/sequence_evaluation.html b/_modules/omc3/correction/sequence_evaluation.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>omc3.correction.sequence_evaluation &mdash; omc3 0.14.1 documentation</title>
+  <title>omc3.correction.sequence_evaluation &mdash; omc3 0.15.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=19f00094" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/custom.css?v=449bdd91" />
@@ -15,7 +15,7 @@
 
         <script src="../../../_static/jquery.js?v=5d32c60e"></script>
         <script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../../_static/documentation_options.js?v=3a3a8e7f"></script>
+        <script src="../../../_static/documentation_options.js?v=ef97403f"></script>
         <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>

diff --git a/_modules/omc3/definitions/formats.html b/_modules/omc3/definitions/formats.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>omc3.definitions.formats &mdash; omc3 0.14.1 documentation</title>
+  <title>omc3.definitions.formats &mdash; omc3 0.15.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=19f00094" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/custom.css?v=449bdd91" />
@@ -15,7 +15,7 @@
 
         <script src="../../../_static/jquery.js?v=5d32c60e"></script>
         <script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../../_static/documentation_options.js?v=3a3a8e7f"></script>
+        <script src="../../../_static/documentation_options.js?v=ef97403f"></script>
         <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>

diff --git a/_modules/omc3/global_correction.html b/_modules/omc3/global_correction.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>omc3.global_correction &mdash; omc3 0.14.1 documentation</title>
+  <title>omc3.global_correction &mdash; omc3 0.15.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
       <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=19f00094" />
       <link rel="stylesheet" type="text/css" href="../../_static/css/custom.css?v=449bdd91" />
@@ -15,7 +15,7 @@
 
         <script src="../../_static/jquery.js?v=5d32c60e"></script>
         <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../_static/documentation_options.js?v=3a3a8e7f"></script>
+        <script src="../../_static/documentation_options.js?v=ef97403f"></script>
         <script src="../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>

diff --git a/_modules/omc3/harpy/clean.html b/_modules/omc3/harpy/clean.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>omc3.harpy.clean &mdash; omc3 0.14.1 documentation</title>
+  <title>omc3.harpy.clean &mdash; omc3 0.15.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=19f00094" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/custom.css?v=449bdd91" />
@@ -15,7 +15,7 @@
 
         <script src="../../../_static/jquery.js?v=5d32c60e"></script>
         <script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../../_static/documentation_options.js?v=3a3a8e7f"></script>
+        <script src="../../../_static/documentation_options.js?v=ef97403f"></script>
         <script src="../../../_static/doctools.js?v=9a2dae69"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/js/theme.js"></script>