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Update VI Bayesian NN notebook to best practices (#221)
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* best practices updates

* updates: coords naming

* fix coords

* style guide changes

* rerun precommit

* fixes

* author names in ref

* run with arviz v0.11.4

* fix links

* fix broken ADVI link
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chiral-carbon authored Oct 24, 2021
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47 changes: 45 additions & 2 deletions examples/references.bib
Original file line number Diff line number Diff line change
Expand Up @@ -48,13 +48,49 @@ @article{koren2009matrixfactorization
doi={10.1109/MC.2009.263}
}

@misc{kingma2014autoencoding,
title={Auto-Encoding Variational Bayes},
author={Diederik P Kingma and Max Welling},
year={2014},
eprint={1312.6114},
archivePrefix={arXiv},
primaryClass={stat.ML}
}

@misc{kucukelbir2015automatic,
title={Automatic Variational Inference in Stan},
author={Alp Kucukelbir and Rajesh Ranganath and Andrew Gelman and David M. Blei},
year={2015},
eprint={1506.03431},
archivePrefix={arXiv},
primaryClass={stat.ML}
}

@book{mcelreath2018statistical,
title={Statistical rethinking: A Bayesian course with examples in R and Stan},
author={McElreath, Richard},
year={2018},
publisher={Chapman and Hall/CRC}
}

@misc{mnih2013playing,
title={Playing Atari with Deep Reinforcement Learning},
author={Volodymyr Mnih and Koray Kavukcuoglu and David Silver and Alex Graves and Ioannis Antonoglou and Daan Wierstra and Martin Riedmiller},
year={2013},
eprint={1312.5602},
archivePrefix={arXiv},
primaryClass={cs.LG}
}

@article{silver2016masteringgo,
title={Mastering the game of Go with deep neural networks and tree search},
author={D. Silver, A. Huang, C. Maddison et al.},
journal={Nature},
volume={529},
pages={484--489},
year={2016},
url={https://doi.org/10.1038/nature16961}
}

@book{james2021statisticallearning,
title={An Introduction to Statistical Learning},
Expand Down Expand Up @@ -88,8 +124,6 @@ @article{lewandowski2009generating
publisher={Elsevier}
}



@inproceedings{mnih2008advances,
title={Probabilistic Matrix Factorization},
author={Mnih, Andriy and Salakhutdinov, Russ R},
Expand Down Expand Up @@ -120,3 +154,12 @@ @inproceedings{salakhutdinov2008bayesian
year={2008},
volume={25}
}

@misc{szegedy2014going,
title={Going Deeper with Convolutions},
author={Christian Szegedy and Wei Liu and Yangqing Jia and Pierre Sermanet and Scott Reed and Dragomir Anguelov and Dumitru Erhan and Vincent Vanhoucke and Andrew Rabinovich},
year={2014},
eprint={1409.4842},
archivePrefix={arXiv},
primaryClass={cs.CV}
}
263 changes: 167 additions & 96 deletions examples/variational_inference/bayesian_neural_network_advi.ipynb

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