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Pull requests list

Export samtools wrappers
#1306 opened Sep 10, 2024 by msto Loading…
fix(libcalignmentfile.pyi): update IteratorColumn with missing import + correct _iter_ object
#1296 opened Jul 6, 2024 by mshunjan Loading…
Improve cigarstring performance
#1295 opened Jun 25, 2024 by limwz01 Loading…
Feature with cigar
#1294 opened Jun 18, 2024 by DrYak Loading…
1
Feature skip softclip
#1293 opened Jun 12, 2024 by DrYak Loading…
import samtools/bcftools/htslib 1.20
#1289 opened May 16, 2024 by ilia-kats Loading…
Speed up bcf genotype count
#1281 opened Apr 22, 2024 by astaric Loading…
+ document how to run bcftools commands from pysam
#1275 opened Mar 31, 2024 by indraniel Loading…
MinGW version of pysam
#1274 opened Mar 28, 2024 by teepean Loading…
3
Automatically translate VariantRecord on write
#1270 opened Feb 26, 2024 by kkchau Loading…
1
Add AlignedSegment.__repr__
#1267 opened Feb 13, 2024 by marcelm Loading…
fix get_messages in docs
#1261 opened Jan 11, 2024 by mbhall88 Loading…
Add FastxRecord to the docs
#1245 opened Nov 25, 2023 by nh13 Loading…
1
Fix error text when array tag typecode is invalid
#1235 opened Oct 12, 2023 by marcus1487 Loading…
5
Update handling of INFO/END when writing records in VCF
#1201 opened Jun 29, 2023 by rickymagner Loading…
2
Added support for persisting IndexedReads index to disk
#1037 opened Aug 26, 2021 by Prakash2403 Loading…
[WIP] build pysam on Windows
#964 opened Nov 3, 2020 by fo40225 Loading…
4
Add with_ref and with_query args for get_aligned_pairs.
#777 opened Mar 23, 2019 by y9c Loading…
1
Implement VariantRecord#calc_number
#672 opened Apr 22, 2018 by multimeric Loading…
2
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