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qbic-pipelines · Mar 12, 2024 · e3dea66 · e3dea66
1 parent 591f1a9
commit e3dea66
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -9,7 +9,7 @@ COPY environment.yml /
 RUN conda install -c conda-forge mamba
 RUN mamba env create --file /environment.yml -p /opt/conda/envs/qbic-pipelines-vcftomaf-dev && \
     mamba clean --all --yes
-RUN apt-get update -qq 
+RUN apt-get update -qq
 # Add conda installation dir to PATH
 ENV PATH /opt/conda/envs/qbic-pipelines-vcftomaf-dev/bin:$PATH
 # Dump the details of the installed packates to a file for posterity

diff --git a/conf/test_vep.config b/conf/test_vep.config
@@ -24,7 +24,7 @@ params {
     input        = "${projectDir}/tests/samplesheets/samplesheet.csv"
     fasta        = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.fasta'
     intervals    = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/genome/genome.bed'
-    vep_cache    = 'https://github.com/nf-core/test-datasets/raw/modules/data/genomics/homo_sapiens/genome/vep.tar.gz' 
+    vep_cache    = 'https://github.com/nf-core/test-datasets/raw/modules/data/genomics/homo_sapiens/genome/vep.tar.gz'
     genome       = 'GATK.GRCh38'
     run_vep      = true