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First release PR #4

Merged
merged 80 commits into from
Mar 13, 2024
Merged

First release PR #4

merged 80 commits into from
Mar 13, 2024

Commits on Aug 3, 2023

  1. ch to qbic-pipelines

    @SusiJo
    SusiJo committed Aug 3, 2023
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  2. first working version

    @SusiJo
    SusiJo committed Aug 3, 2023
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  3. testing successful

    @SusiJo
    SusiJo committed Aug 3, 2023
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  4. docu

    @SusiJo
    SusiJo committed Aug 3, 2023
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Commits on Aug 4, 2023

  1. add docu

    @SusiJo
    SusiJo committed Aug 4, 2023
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  2. prettier + paths

    @SusiJo
    SusiJo committed Aug 4, 2023
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  3. add test.config

    @SusiJo
    SusiJo committed Aug 4, 2023
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  4. add ci + rm todo

    @SusiJo
    SusiJo committed Aug 4, 2023
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  5. ignore files

    @SusiJo
    SusiJo committed Aug 4, 2023
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  6. add to changelog

    @SusiJo
    SusiJo committed Aug 4, 2023
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Commits on Aug 7, 2023

  1. rm fastq module + add unique key

    @SusiJo
    SusiJo committed Aug 7, 2023
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  2. apply suggestions from code review

    @SusiJo
    SusiJo committed Aug 7, 2023
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  3. update ensembl-vep

    @SusiJo
    SusiJo committed Aug 7, 2023
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Commits on Aug 8, 2023

  1. add container for umccr/vcf2maf

    @SusiJo
    SusiJo committed Aug 8, 2023
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Commits on Aug 9, 2023

  1. apply review suggestions

    @SusiJo
    SusiJo committed Aug 9, 2023
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  2. add qbic-logo images

    @SusiJo
    SusiJo committed Aug 9, 2023
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  3. add qbic info

    @SusiJo
    SusiJo committed Aug 9, 2023
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Commits on Aug 10, 2023

  1. add mulled container bioconda

    @SusiJo
    SusiJo committed Aug 10, 2023
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  2. ch channel to bioconda

    @SusiJo
    SusiJo committed Aug 10, 2023
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Commits on Sep 5, 2023

  1. Merge pull request #1 from SusiJo/first_version 

    Small steps - First working version
    @FriederikeHanssen
    FriederikeHanssen authored Sep 5, 2023
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  2. remove unused module, attempt to fix id mess for maf ids

    @FriederikeHanssen
    FriederikeHanssen committed Sep 5, 2023
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  3. add closure

    @FriederikeHanssen
    FriederikeHanssen committed Sep 5, 2023
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  4. fix vcf id

    @FriederikeHanssen
    FriederikeHanssen committed Sep 5, 2023
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  5. remove view statement

    @FriederikeHanssen
    FriederikeHanssen committed Sep 5, 2023
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Commits on Dec 18, 2023

  1. fix config

    @FriederikeHanssen
    FriederikeHanssen committed Dec 18, 2023
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  2. add picard liftover

    @FriederikeHanssen
    FriederikeHanssen committed Dec 18, 2023
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  3. fix naming

    @FriederikeHanssen
    FriederikeHanssen committed Dec 18, 2023
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  4. add view statements for debugging

    @FriederikeHanssen
    FriederikeHanssen committed Dec 18, 2023
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  5. Initialise dict

    @FriederikeHanssen
    FriederikeHanssen committed Dec 18, 2023
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  6. fix initialising

    @FriederikeHanssen
    FriederikeHanssen committed Dec 18, 2023
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  7. fix mapping

    @FriederikeHanssen
    FriederikeHanssen committed Dec 18, 2023
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  8. fix ordering

    @FriederikeHanssen
    FriederikeHanssen committed Dec 18, 2023
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  9. unzip vcf before conversion

    @FriederikeHanssen
    FriederikeHanssen committed Dec 18, 2023
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  10. unzip vcf before conversion

    @FriederikeHanssen
    FriederikeHanssen committed Dec 18, 2023
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Commits on Dec 19, 2023

  1. IMprove samplesheet handeling

    @FriederikeHanssen
    FriederikeHanssen committed Dec 19, 2023
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  2. Merge pull request #3 from FriederikeHanssen/dev 

    add liftover module, make ids from samplesheet work
    @FriederikeHanssen
    FriederikeHanssen authored Dec 19, 2023
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  3. play around with logs

    @FriederikeHanssen
    FriederikeHanssen committed Dec 19, 2023
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  4. play around with logs

    @FriederikeHanssen
    FriederikeHanssen committed Dec 19, 2023
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Commits on Mar 11, 2024

  1. Update README.md

    @FriederikeHanssen
    FriederikeHanssen authored Mar 11, 2024
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  2. Merge branch 'qbic-pipelines:dev' into dev

    @FriederikeHanssen
    FriederikeHanssen authored Mar 11, 2024
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  3. prepare release

    @FriederikeHanssen
    FriederikeHanssen committed Mar 11, 2024
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  4. Merge pull request #5 from FriederikeHanssen/prepare_firstrelease 

    Prepare firstrelease
    @FriederikeHanssen
    FriederikeHanssen authored Mar 11, 2024
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  5. template weirdness

    @FriederikeHanssen
    FriederikeHanssen committed Mar 11, 2024
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  6. template weirdness

    @FriederikeHanssen
    FriederikeHanssen committed Mar 11, 2024
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  7. Template 2.13.1

    @FriederikeHanssen
    FriederikeHanssen committed Mar 11, 2024
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Commits on Mar 12, 2024

  1. Merge 2.13.1

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  2. lint everything

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  3. more refactoring, where are all my channels

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  4. move fromSampleSheet call to subworkflow

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  5. fix issues

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  6. remove release announcements

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  7. remove nfcore logo from logs

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  8. remove customsoftwarevrsion

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  9. debug weird function error

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  10. debug weird function error

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  11. debug weird function error

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  12. debug weird function error

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  13. debug weird function error

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  14. debug weird function error

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  15. debug weird function error

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  16. debug weird function error

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  17. maybe the schema is the cuprit

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  18. maybe the schema is the cuprit

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  19. maybe the schema is the cuprit

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  20. why

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  21. why

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  22. why

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  23. why

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  24. why

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  25. why

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  26. why

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  27. why

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  28. why

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  29. chain is a reserved word

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  30. Merge pull request #6 from FriederikeHanssen/template 

    Template 2.13.1
    @FriederikeHanssen
    FriederikeHanssen authored Mar 12, 2024
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  31. Apply suggestions from code review

    @FriederikeHanssen
    FriederikeHanssen authored Mar 12, 2024
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  32. remove VEP

    @FriederikeHanssen
    FriederikeHanssen committed Mar 12, 2024
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  33. Merge pull request #7 from FriederikeHanssen/disabe_vep 

    Disable VEP
    @FriederikeHanssen
    FriederikeHanssen authored Mar 12, 2024
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Commits on Mar 13, 2024

  1. adress reviews

    @FriederikeHanssen
    FriederikeHanssen committed Mar 13, 2024
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  2. Merge pull request #8 from FriederikeHanssen/reviewcomments 

    adress reviews
    @FriederikeHanssen
    FriederikeHanssen authored Mar 13, 2024
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