Skip to content
@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

Pinned Loading

  1. qiime2 qiime2 Public

    Source for the QIIME 2 Framework (Q2F).

    Python 516 257

  2. distributions distributions Public

    Makefile 5 8

  3. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 19 27

  4. docs docs Public archive

    Python 21 60

Repositories

Showing 10 of 80 repositories
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 2 3 1 Updated Oct 17, 2025
  • q2view Public

    A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations

    qiime2/q2view’s past year of commit activity
    TypeScript 1 BSD-3-Clause 3 1 0 Updated Oct 16, 2025
  • q2-feature-table Public

    QIIME 2 plugin supporting operations on feature tables.

    qiime2/q2-feature-table’s past year of commit activity
    Python 2 BSD-3-Clause 40 21 (2 issues need help) 0 Updated Oct 16, 2025
  • qiime2 Public

    Source for the QIIME 2 Framework (Q2F).

    qiime2/qiime2’s past year of commit activity
    Python 516 BSD-3-Clause 257 66 (4 issues need help) 11 Updated Oct 16, 2025
  • q2-types Public
    qiime2/q2-types’s past year of commit activity
    Python 17 BSD-3-Clause 43 25 (2 issues need help) 2 Updated Oct 15, 2025
  • distributions Public
    qiime2/distributions’s past year of commit activity
    Makefile 5 BSD-3-Clause 8 8 5 Updated Oct 15, 2025
  • q2-vizard Public

    The first choice of wizard lizards for interactive, generalized microbiome data visualization!

    qiime2/q2-vizard’s past year of commit activity
    Python 1 BSD-3-Clause 12 5 2 Updated Oct 15, 2025
  • q2cli Public

    Command line interface for QIIME 2

    qiime2/q2cli’s past year of commit activity
    Python 19 BSD-3-Clause 27 11 4 Updated Oct 15, 2025
  • q2templates Public

    Design template package for QIIME 2 Plugins

    qiime2/q2templates’s past year of commit activity
    Python 4 BSD-3-Clause 15 0 0 Updated Oct 2, 2025
  • q2doc Public

    A MyST executable plugin for documenting QIIME 2 plugins.

    qiime2/q2doc’s past year of commit activity
    Python 0 1 5 0 Updated Sep 25, 2025

Top languages

Loading…

Most used topics

Loading…