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ENH: include error model plots in denoise-* output #158

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nbokulich opened this issue Mar 9, 2023 · 3 comments
Open

ENH: include error model plots in denoise-* output #158

nbokulich opened this issue Mar 9, 2023 · 3 comments

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@nbokulich
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Improvement Description
The error model plots output by dada2 can be useful for diagnosing issues with the model. This is used in tandem with the denoising-stats output to evaluate outcomes, e.g., too many reads lost at the denoising stage could indicate a poor error model. The plots output by q2-dada2 should be included in the outputs of denoise-* to assist with troubleshooting.

Current Behavior
No error model information is output.

Proposed Behavior
Include error model plots from plotErrors() as a separate tab in the denoise-stats output.

@lizgehret lizgehret self-assigned this Aug 23, 2023
@lizgehret lizgehret removed their assignment Jul 11, 2024
@gregcaporaso
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@jordenrabasco, any chance this would be something you'd be interested and available to work on?

cc @benjjneb

@jordenrabasco
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@gregcaporaso Yeah I am definitely interested! I am currently out of town until the end of the month, but then I should have a few weeks relatively free in early Aug where I can look into this. Does that work for a timeline on your end?

@gregcaporaso
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Definitely, thanks for your interest @jordenrabasco!

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