Update dependencies

[airwoodix]

Summary

Update all dependencies.

Notable changes:

• Qiskit 1.0.1 -> 1.1.0 (changelog)
• pyproject-fmt -> 2.x changes the style (see e.g. the changelog for 2.0.0).

The Qiskit update breaks equivalent assertion in the QFT circuit transpilation test for optimization level 2. There was already an exception for level 3, now for level 2 as well.

Details and comments

All updates:

  - Removing natsort (8.4.0)
  - Updating rpds-py (0.18.0 -> 0.18.1)
  - Updating platformdirs (4.2.1 -> 4.2.2)
  - Updating babel (2.14.0 -> 2.15.0)
  - Updating cryptography (42.0.5 -> 42.0.7)
  - Updating pygments (2.17.2 -> 2.18.0)
  - Updating requests (2.31.0 -> 2.32.1)
  - Updating annotated-types (0.6.0 -> 0.7.0)
  - Updating matplotlib (3.8.4 -> 3.9.0)
  - Updating qiskit (1.0.2 -> 1.1.0)
  - Updating faker (25.0.1 -> 25.2.0)
  - Updating genson (1.2.2 -> 1.3.0)
  - Installing pyproject-fmt-rust (1.1.3)
  - Updating virtualenv (20.26.1 -> 20.26.2)
  - Updating coverage (7.5.0 -> 7.5.1)
  - Updating hypothesis (6.100.2 -> 6.102.4)
  - Updating polyfactory (2.15.0 -> 2.16.0)
  - Updating pre-commit (3.7.0 -> 3.7.1)
  - Updating pyproject-fmt (1.8.0 -> 2.1.3)
  - Updating ruff (0.4.2 -> 0.4.4)
  - Updating tomlkit (0.12.4 -> 0.12.5)
  - Updating types-requests (2.31.0.20240406 -> 2.32.0.20240521)

[airwoodix]

Blocked by #160.