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1. scModules scModules Public

   scModules is an R package for advanced processing and visualization of single-cell RNA-seq and TCR-seq data.

   R

2. LINE1_gemomic_alignment_and_clustering LINE1_gemomic_alignment_and_clustering Public

   Pipeline V1.0 for analysis of LINE1 genomic insertion sites in human cells

   Perl 2 1

3. CallingCard_pipelineV1 CallingCard_pipelineV1 Public

   Pipeline V1.0 for genome-wide identification of transcription factor binding sites by CallingCard sequencing method.

   Python

4. CallingCard_pipelineV2 CallingCard_pipelineV2 Public

   Pipeline V2.0 for genome-wide identification of transcription factor binding sites by CallingCard sequencing method.

   Python

5. bulk_RNAseq_pipeline bulk_RNAseq_pipeline Public

   standard workflow for bulk RNA-seq

   R

6. single_cell_deconvolution single_cell_deconvolution Public

   Deconvolution of bulk RNA-seq data using single-cell RNA-seq data as a reference