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Merged
ChrisgKent merged 1 commit into from
May 29, 2026
Merged

added bccdc-andv-2026/400/v1.0.0 #82

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52 changes: 52 additions & 0 deletions primerschemes/bccdc-andv-2026/400/v1.0.0/README.md
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# bccdc-andv-2026 400bp v1.0.0

[![Generic badge](https://img.shields.io/badge/STATUS-tested-green.svg)](https://labs.primalscheme.com/faqs)

[primalscheme labs](https://labs.primalscheme.com/detail/bccdc-andv-2026/400/v1.0.0)

## Overviews

## Details

```json
{
"ampliconsize": 400,
"schemeversion": "v1.0.0",
"schemename": "bccdc-andv-2026",
"primer_bed_md5": "c7d4ac2b9a89658dd5cdd6519e0d9d58",
"reference_fasta_md5": "a59c3476c840740fc8845cf80f07f45c",
"status": "tested",
"citations": [],
"authors": [
"John Tyson"
],
"algorithmversion": "primalscheme3.3",
"species": [
1980456
],
"license": "CC BY-SA 4.0",
"primerclass": "primerschemes",
"infoschema": "v2.1.0",
"articbedversion": "v3.0",
"collections": [],
"links": {
"protocols": [],
"validation": [],
"homepage": [],
"vendors": [],
"misc": []
},
"refselect": null,
"description": null,
"derivedfrom": null,
"contactinfo": null
}
```



------------------------------------------------------------------------

This work is licensed under a [Creative Commons Attribution-ShareAlike 4.0 International License](http://creativecommons.org/licenses/by-sa/4.0/)

![](https://i.creativecommons.org/l/by-sa/4.0/88x31.png)
32 changes: 32 additions & 0 deletions primerschemes/bccdc-andv-2026/400/v1.0.0/info.json
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{
"ampliconsize": 400,
"schemeversion": "v1.0.0",
"schemename": "bccdc-andv-2026",
"primer_bed_md5": "c7d4ac2b9a89658dd5cdd6519e0d9d58",
"reference_fasta_md5": "a59c3476c840740fc8845cf80f07f45c",
"status": "tested",
"citations": [],
"authors": [
"John Tyson"
],
"algorithmversion": "primalscheme3.3",
"species": [
1980456
],
"license": "CC BY-SA 4.0",
"primerclass": "primerschemes",
"infoschema": "v2.1.0",
"articbedversion": "v3.0",
"collections": [],
"links": {
"protocols": [],
"validation": [],
"homepage": [],
"vendors": [],
"misc": []
},
"refselect": null,
"description": null,
"derivedfrom": null,
"contactinfo": null
}
66 changes: 66 additions & 0 deletions primerschemes/bccdc-andv-2026/400/v1.0.0/primer.bed
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# artic-bed-version v3.0
# pc=PrimerCountInMSA
ANDV_Switzerland_Hu_3337_2026_L 0 30 deddcf34_1_LEFT_1 1 + AGTAGTAGACTCCGGGATAGAAAAAGTTAG pc=1
ANDV_Switzerland_Hu_3337_2026_L 440 466 deddcf34_1_RIGHT_1 1 - CCTTGACTCGATTTCAAGTAAGTGCT pc=1
ANDV_Switzerland_Hu_3337_2026_L 399 430 deddcf34_2_LEFT_1 2 + GGAAAAGAAAATAAAGTATGAAGGAGGCCTT pc=1
ANDV_Switzerland_Hu_3337_2026_L 839 863 deddcf34_2_RIGHT_1 2 - ACTGCTCATGACTCTCAAATGCCT pc=1
ANDV_Switzerland_Hu_3337_2026_L 804 829 deddcf34_3_LEFT_1 1 + TGTATTCAAGGAAGTCAGTGGAGCT pc=1
ANDV_Switzerland_Hu_3337_2026_L 1244 1274 deddcf34_3_RIGHT_1 1 - TCTGTATTTGACTTGCCACATTTATGCTAT pc=1
ANDV_Switzerland_Hu_3337_2026_L 1206 1234 deddcf34_4_LEFT_1 2 + GCATAAAAAGGATAAGGGGTTGTTTGGT pc=1
ANDV_Switzerland_Hu_3337_2026_L 1646 1679 deddcf34_4_RIGHT_1 2 - CAGCCTTAGAATCAATATTGTCCACATCTATTA pc=1
ANDV_Switzerland_Hu_3337_2026_L 1554 1587 deddcf34_5_LEFT_1 1 + GAATGTAATTCTGTTTATTTTGCCATCAAAGTC pc=1
ANDV_Switzerland_Hu_3337_2026_L 1988 2023 deddcf34_5_RIGHT_1 1 - AGAATAAAGGTATACATCCAGTGAACTCTTAAATG pc=1
ANDV_Switzerland_Hu_3337_2026_L 1932 1964 deddcf34_6_LEFT_1 2 + AGTAACATCTTTGTATTCTGGGTATGAATTGT pc=1
ANDV_Switzerland_Hu_3337_2026_L 2372 2400 deddcf34_6_RIGHT_1 2 - TCTTGACAAAAGAGCTGTTGTTCTACAT pc=1
ANDV_Switzerland_Hu_3337_2026_L 2314 2344 deddcf34_7_LEFT_1 1 + GGTGATATTCTTCTAAAGGAAGGCTATACG pc=1
ANDV_Switzerland_Hu_3337_2026_L 2754 2785 deddcf34_7_RIGHT_1 1 - TGCAATTGCATCAAAATAATCCTCTATGATC pc=1
ANDV_Switzerland_Hu_3337_2026_L 2693 2720 deddcf34_8_LEFT_1 2 + AGAGGACAGAAGCAGATAGAGGATTTT pc=1
ANDV_Switzerland_Hu_3337_2026_L 3133 3161 deddcf34_8_RIGHT_1 2 - CCAAGAAATCTTCAACTGCATCTGAATG pc=1
ANDV_Switzerland_Hu_3337_2026_L 3081 3112 deddcf34_9_LEFT_1 1 + TGAATTCTTTATGTCTAGGAAATTACACCGA pc=1
ANDV_Switzerland_Hu_3337_2026_L 3521 3551 deddcf34_9_RIGHT_1 1 - GAAATTCTGCATTAGTAGGTGAAACTGTTG pc=1
ANDV_Switzerland_Hu_3337_2026_L 3442 3475 deddcf34_10_LEFT_1 2 + CAAGAGATGTGGAAGAGTATGTTTAATCTACAT pc=1
ANDV_Switzerland_Hu_3337_2026_L 3875 3907 deddcf34_10_RIGHT_1 2 - TTTTAGAATATTTTTATCTGCCATCCCGAAAC pc=1
ANDV_Switzerland_Hu_3337_2026_L 3836 3865 deddcf34_11_LEFT_1 1 + GTGATGGTTCGATGTCTATTATGGAACTT pc=1
ANDV_Switzerland_Hu_3337_2026_L 4276 4302 deddcf34_11_RIGHT_1 1 - TCACCTTCATACCGGCATACTTTCAT pc=1
ANDV_Switzerland_Hu_3337_2026_L 4244 4266 deddcf34_12_LEFT_1 2 + AACTCCGTTTTCGTATGCAGGC pc=1
ANDV_Switzerland_Hu_3337_2026_L 4684 4716 deddcf34_12_RIGHT_1 2 - GCTATACGTTTTAAAACCTCAGGAGAACTTAT pc=1
ANDV_Switzerland_Hu_3337_2026_L 4648 4672 deddcf34_13_LEFT_1 1 + ATGAAGGATGGGGTTTACAGGGAA pc=1
ANDV_Switzerland_Hu_3337_2026_L 5088 5122 deddcf34_13_RIGHT_1 1 - CACACTTTTATAACCTAACACATCATATAAGAGC pc=1
ANDV_Switzerland_Hu_3337_2026_L 5049 5076 deddcf34_14_LEFT_1 2 + AGTTGTGCCTATTGATCCTGAGATACA pc=1
ANDV_Switzerland_Hu_3337_2026_L 5489 5516 deddcf34_14_RIGHT_1 2 - GCTGTTTTGTACGAAGTCCAGTTCTCA pc=1
ANDV_Switzerland_Hu_3337_2026_L 5446 5472 deddcf34_15_LEFT_1 1 + GGTAAGCCTAATGTGCCATGTATTGT pc=1
ANDV_Switzerland_Hu_3337_2026_L 5886 5917 deddcf34_15_RIGHT_1 1 - CATTGATGTCACAGTACTATAACCTTCAGAT pc=1
ANDV_Switzerland_Hu_3337_2026_L 5809 5841 deddcf34_16_LEFT_1 2 + GATTTGTTTATGTTCAATGAACTACTAGCACT pc=1
ANDV_Switzerland_Hu_3337_2026_L 6249 6275 deddcf34_16_RIGHT_1 2 - GTAGTGCAAGAGGTGTTGAACTGAAA pc=1
ANDV_Switzerland_Hu_3337_2026_L 6118 6143 deddcf34_17_LEFT_1 1 + CGTGGGGTGACAAGAGTATTAGAGC pc=1
ANDV_Switzerland_Hu_3337_2026_L 6535 6560 deddcf34_17_RIGHT_1 1 - AGTAGTATGCTCCGGGAAAAGAACA pc=1
ANDV_Switzerland_Hu_3337_2026_M 24 55 577a2d57_1_LEFT_1 2 + TTAAAGAAGTGAATTTAAAATGGAAGGGTGG pc=1
ANDV_Switzerland_Hu_3337_2026_M 464 492 577a2d57_1_RIGHT_1 2 - GCAATCAGATAAACAGTTGGCTGACAAT pc=1
ANDV_Switzerland_Hu_3337_2026_M 421 451 577a2d57_2_LEFT_1 1 + AAAAAGACAGTCCTGTGTTATGATCTAACA pc=1
ANDV_Switzerland_Hu_3337_2026_M 858 882 577a2d57_2_RIGHT_1 1 - GGGTGTACAAGCATCCTACTGACA pc=1
ANDV_Switzerland_Hu_3337_2026_M 808 836 577a2d57_3_LEFT_1 2 + TCAGAACCTTTAATTGTTCCAAGTCTGG pc=1
ANDV_Switzerland_Hu_3337_2026_M 1248 1273 577a2d57_3_RIGHT_1 2 - GACAAGACATGTTGGGGAACTGATG pc=1
ANDV_Switzerland_Hu_3337_2026_M 1210 1236 577a2d57_4_LEFT_1 1 + GCTAGCTGTGAAGCCTATTCTGAAAA pc=1
ANDV_Switzerland_Hu_3337_2026_M 1650 1678 577a2d57_4_RIGHT_1 1 - TGATCCCATAGTCTTCTGGTATTCAACT pc=1
ANDV_Switzerland_Hu_3337_2026_M 1579 1611 577a2d57_5_LEFT_1 2 + AGGGTTTTAATATTTTCTTGTTCCCATTACAC pc=1
ANDV_Switzerland_Hu_3337_2026_M 2019 2043 577a2d57_5_RIGHT_1 2 - ACACCATGAGCTGTATCTGACCAA pc=1
ANDV_Switzerland_Hu_3337_2026_M 1986 2008 577a2d57_6_LEFT_1 1 + CGCAAGTGCAGAGACTCCACTA pc=1
ANDV_Switzerland_Hu_3337_2026_M 2422 2458 577a2d57_6_RIGHT_1 1 - GGTGTATTTTAAAGAAATTATCTTATAGGCCTTTCC pc=1
ANDV_Switzerland_Hu_3337_2026_M 2383 2411 577a2d57_7_LEFT_1 2 + ACTGCTTGTGGTGTTTATCTCGATAAAT pc=1
ANDV_Switzerland_Hu_3337_2026_M 2823 2854 577a2d57_7_RIGHT_1 2 - TGTGATGTGAGGTTCTGTTAAGTTAAATGAT pc=1
ANDV_Switzerland_Hu_3337_2026_M 2751 2779 577a2d57_8_LEFT_1 1 + TCCAGTTTGTGAATATCAAGGAAACACC pc=1
ANDV_Switzerland_Hu_3337_2026_M 3190 3219 577a2d57_8_RIGHT_1 1 - AGTAGACCCTCAGTAGAACAATCTGTATC pc=1
ANDV_Switzerland_Hu_3337_2026_M 3118 3141 577a2d57_9_LEFT_1 2 + GCCAGGGGCTCTAATACAGTGAA pc=1
ANDV_Switzerland_Hu_3337_2026_M 3550 3585 577a2d57_9_RIGHT_1 2 - AAGTGAGGTTAGTTCCATAATACTCTTATAAAGTC pc=1
ANDV_Switzerland_Hu_3337_2026_M 3219 3241 577a2d57_10_LEFT_1 1 + TGCATCAGCCCCACATCTTGAG pc=1
ANDV_Switzerland_Hu_3337_2026_M 3623 3649 577a2d57_10_RIGHT_1 1 - GCAGGAACAAAATCCTCGGTAAGAGA pc=1
ANDV_Switzerland_Hu_3337_2026_S 19 41 aa73d2ab_1_LEFT_1 1 + CGAAAGCTGGAATGAGCACCCT pc=1
ANDV_Switzerland_Hu_3337_2026_S 459 482 aa73d2ab_1_RIGHT_1 1 - TCTTTCACAGTCTGTCTCCCACG pc=1
ANDV_Switzerland_Hu_3337_2026_S 406 433 aa73d2ab_2_LEFT_1 2 + TCTTAGGGTTTGCAATTCCGATCATAC pc=1
ANDV_Switzerland_Hu_3337_2026_S 842 875 aa73d2ab_2_RIGHT_1 2 - TCAATAATGTCTTGAACCTTAGATTCATTGACT pc=1
ANDV_Switzerland_Hu_3337_2026_S 803 832 aa73d2ab_3_LEFT_1 1 + GTCTACCAACAAGATGTATTTCCTGAACA pc=1
ANDV_Switzerland_Hu_3337_2026_S 1243 1266 aa73d2ab_3_RIGHT_1 1 - CAGGGATTGAGCTAGCTGCCTTA pc=1
ANDV_Switzerland_Hu_3337_2026_S 1138 1162 aa73d2ab_4_LEFT_1 2 + CTATGGGGATTCAACTGGACCAGA pc=1
ANDV_Switzerland_Hu_3337_2026_S 1576 1607 aa73d2ab_4_RIGHT_1 2 - TCAATCAGTGATTTCATATAGCTGATTCCTT pc=1
ANDV_Switzerland_Hu_3337_2026_S 1381 1412 aa73d2ab_5_LEFT_1 1 + GGACCTATCCTTAATGTGATTAATAGGGTCT pc=1
ANDV_Switzerland_Hu_3337_2026_S 1807 1842 aa73d2ab_5_RIGHT_1 1 - GCAATCAAGAAAAATCAAATATGAGGTAGTATGTG pc=1
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