add chikv primers from zibra project

primerschemes/zibra-chikv-ecsa/300/v1.0.0/README.md

@@ -0,0 +1,57 @@
+# zibra-chikv-ecsa-300 300bp v1.0.0
+
+[![Generic badge](https://img.shields.io/badge/STATUS-draft-blue.svg)](https://labs.primalscheme.com/faqs)
+
+> If you use this scheme please cite: Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples. doi:10.1038/nprot.2017.066
+
+[primalscheme labs](https://labs.primalscheme.com/detail/zibra-chikv-ecsa-300/300/v1.0.0)
+
+## Overviews
+
+## Details
+
+```json
+{
+    "ampliconsize": 300,
+    "schemeversion": "v1.0.0",
+    "schemename": "zibra-chikv-ecsa-300",
+    "primer_bed_md5": "69837908bf4d89963193fc2c673fcea5",
+    "reference_fasta_md5": "7f06dfa1bf98cd8bc7ed4b86ec000b40",
+    "status": "draft",
+    "citations": [
+        "Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples. doi:10.1038/nprot.2017.066"
+    ],
+    "authors": [
+        "quick-lab",
+        "loman-lab"
+    ],
+    "algorithmversion": "ps:100",
+    "species": [
+        37124
+    ],
+    "license": "CC BY-SA 4.0",
+    "primerclass": "primerschemes",
+    "infoschema": "v2.1.0",
+    "articbedversion": "v3.0",
+    "collections": [],
+    "links": {
+        "protocols": [],
+        "validation": [],
+        "homepage": [],
+        "vendors": [],
+        "misc": []
+    },
+    "refselect": null,
+    "description": null,
+    "derivedfrom": null,
+    "contactinfo": null
+}
+```
+
+
+
+------------------------------------------------------------------------
+
+This work is licensed under a [Creative Commons Attribution-ShareAlike 4.0 International License](http://creativecommons.org/licenses/by-sa/4.0/) 
+
+![](https://i.creativecommons.org/l/by-sa/4.0/88x31.png)

primerschemes/zibra-chikv-ecsa/300/v1.0.0/info.json

@@ -0,0 +1,35 @@
+{
+    "ampliconsize": 300,
+    "schemeversion": "v1.0.0",
+    "schemename": "zibra-chikv-ecsa",
+    "primer_bed_md5": "69837908bf4d89963193fc2c673fcea5",
+    "reference_fasta_md5": "7f06dfa1bf98cd8bc7ed4b86ec000b40",
+    "status": "validated",
+    "citations": [
+        "Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples. doi:10.1038/nprot.2017.066"
+    ],
+    "authors": [
+        "quick-lab",
+        "loman-lab"
+    ],
+    "algorithmversion": "ps:100",
+    "species": [
+        37124
+    ],
+    "license": "CC BY-SA 4.0",
+    "primerclass": "primerschemes",
+    "infoschema": "v2.1.0",
+    "articbedversion": "v3.0",
+    "collections": [],
+    "links": {
+        "protocols": [],
+        "validation": [],
+        "homepage": [],
+        "vendors": [],
+        "misc": []
+    },
+    "refselect": null,
+    "description": null,
+    "derivedfrom": null,
+    "contactinfo": null
+}

primerschemes/zibra-chikv-ecsa/300/v1.0.0/primer.bed

@@ -0,0 +1,89 @@
+# artic-bed-version v3.0
+KP164568.1	115	137	CHIK400_1_LEFT_3	1	+	CTTTTTGAAGGCCCTGCAACGT	
+KP164568.1	428	451	CHIK400_1_RIGHT_3	1	-	ACGGCCATCACCTCTTGTAAGT	
+KP164568.1	294	316	CHIK400_2_LEFT_0	2	+	TGTCGGACAGGAAGTACCACTG	
+KP164568.1	660	685	CHIK400_2_RIGHT_0	2	-	CTCATCCGCCCAATTTGTCGAG	
+KP164568.1	595	617	CHIK400_3_LEFT_0	1	+	GTACTGGGTAGGGTTCGACACA	
+KP164568.1	902	924	CHIK400_3_RIGHT_0	1	-	CACACGAAACCACTGTGTCACA	
+KP164568.1	860	882	CHIK400_4_LEFT_4	2	+	TCGGTGTTCCATCTAAAGGGCA	
+KP164568.1	1195	1217	CHIK400_4_RIGHT_4	2	-	CTTCATGGTGTTCGTGTTCCGT	
+KP164568.1	1153	1175	CHIK400_5_LEFT_0	1	+	GGTGGGGCTGAACCAGAGAATA	
+KP164568.1	1408	1430	CHIK400_5_RIGHT_0	1	-	TACAAAGCTGTCGAATTCGGCC	
+KP164568.1	1349	1371	CHIK400_6_LEFT_4	2	+	AAGCAGAAAACACACACGGTCT	
+KP164568.1	1686	1710	CHIK400_6_RIGHT_4	2	-	GCGCCTCTCGGAGTCTCTATTA	
+KP164568.1	1614	1636	CHIK400_7_LEFT_0	1	+	TACAGGCAGCACAGGAAGATGT	
+KP164568.1	1908	1930	CHIK400_7_RIGHT_0	1	-	TGGAAGTCTTCGGGCGAAATTG	
+KP164568.1	1816	1838	CHIK400_8_LEFT_1	2	+	GGAGCAAGTGAAGACGTGTACG	
+KP164568.1	2192	2214	CHIK400_8_RIGHT_1	2	-	TATATGGACAAGCGGGGCGAAT	
+KP164568.1	2105	2127	CHIK400_9_LEFT_0	1	+	TGCAAGAAGGAAGAAGCTGCAG	
+KP164568.1	2463	2485	CHIK400_9_RIGHT_0	1	-	AAGGCGATCAAGGCAAGTAACG	
+KP164568.1	2368	2390	CHIK400_10_LEFT_0	2	+	ATCTGCACGTACGGTTGATTCG	
+KP164568.1	2709	2731	CHIK400_10_RIGHT_0	2	-	GGTTTTGTTGAGCCCGTAGTGT	
+KP164568.1	2663	2685	CHIK400_11_LEFT_0	1	+	GGCAAAATGCGCACTACGAATG	
+KP164568.1	2916	2938	CHIK400_11_RIGHT_0	1	-	CCTTCCGTACGCGTTAGGAGTA	
+KP164568.1	2845	2868	CHIK400_12_LEFT_1	2	+	AGGAGTTTACGCAGTTAGGCAAA	
+KP164568.1	3220	3242	CHIK400_12_RIGHT_1	2	-	TTCATTCAGGGCTACTTCGGGT	
+KP164568.1	3129	3151	CHIK400_13_LEFT_0	1	+	TGGTCCCTATCCTCGAAACAGC	
+KP164568.1	3431	3453	CHIK400_13_RIGHT_0	1	-	TCCTGGTAGTCACGCAGATCTG	
+KP164568.1	3367	3389	CHIK400_14_LEFT_0	2	+	TGAGGCAGCGTCCATTCTAGAA	
+KP164568.1	3697	3719	CHIK400_14_RIGHT_0	2	-	ATACCTACCAAGTGTTGCCGGT	
+KP164568.1	3609	3632	CHIK400_15_LEFT_4	1	+	ACCTTGCACTGCCTACTAAGAGA	
+KP164568.1	3921	3947	CHIK400_15_RIGHT_4	1	-	ACATGGTGGTTTCAATGCTCTGG	
+KP164568.1	3852	3874	CHIK400_16_LEFT_0	2	+	TCAGAGCATACGGTTACGCAGA	
+KP164568.1	4221	4243	CHIK400_16_RIGHT_0	2	-	TTTGCGGTTCCTACTGGTGTTG	
+KP164568.1	4166	4188	CHIK400_17_LEFT_0	1	+	GACGGTGTTTGCAAGGCAGTAT	
+KP164568.1	4452	4474	CHIK400_17_RIGHT_0	1	-	TCCATGGCTGTAAAGAGGTGGT	
+KP164568.1	4393	4415	CHIK400_18_LEFT_0	2	+	ACCTCTCCTCTCCACAGGTGTA	
+KP164568.1	4731	4753	CHIK400_18_RIGHT_0	2	-	GCCTCTATTTGCTTTGGCCACA	
+KP164568.1	4680	4702	CHIK400_19_LEFT_0	1	+	AAGGGACACGTTTTCACCAGAC	
+KP164568.1	4970	4994	CHIK400_19_RIGHT_0	1	-	GGAGCATTTGACTTTTTGCACTCC	
+KP164568.1	4898	4920	CHIK400_20_LEFT_0	2	+	CGACTTCGCATGAACCATGTCA	
+KP164568.1	5187	5209	CHIK400_20_RIGHT_0	2	-	GTATGTATCGCCCCGTCGTCTA	
+KP164568.1	4301	4332	CHIK400_21_LEFT_0	1	+	AGTTTGATCTAAGCGCCGATGG	
+KP164568.1	5491	5513	CHIK400_21_RIGHT_0	1	-	AAATGTGATGGGGAACGTCTCG	
+KP164568.1	5406	5429	CHIK400_22_LEFT_0	2	+	CGCGTGACACAGCTATTTCCTT	
+KP164568.1	5700	5722	CHIK400_22_RIGHT_0	2	-	TGGCGTACCGACTTCTGTTGTA	
+KP164568.1	5628	5650	CHIK400_23_LEFT_0	1	+	ACACGGACGACGAGTTATGACT	
+KP164568.1	5991	6013	CHIK400_23_RIGHT_0	1	-	GACAATCGGACGTTGATCGGAG	
+KP164568.1	5928	5950	CHIK400_24_LEFT_0	2	+	TAATGGCAGAGACCCCGAAAGT	
+KP164568.1	6226	6248	CHIK400_24_RIGHT_0	2	-	TGTGTTCTGGAATGGGGAAGGT	
+KP164568.1	6146	6168	CHIK400_25_LEFT_0	1	+	CGAGCGACATTCAATCCGTCAA	
+KP164568.1	6475	6497	CHIK400_25_RIGHT_0	1	-	CGGCAGCAGATTATGGGTTCTT	
+KP164568.1	6380	6402	CHIK400_26_LEFT_3	2	+	GAAGAATTTGCTGCCAGCCCTA	
+KP164568.1	6722	6744	CHIK400_26_RIGHT_3	2	-	GTGCGGCTATAATGGCATCGAA	
+KP164568.1	6657	6679	CHIK400_27_LEFT_0	1	+	TTAGGAGATTGAACGCCGTCCT	
+KP164568.1	7008	7033	CHIK400_27_RIGHT_0	1	-	GTCAGACGATCTTCCAACACCC	
+KP164568.1	6916	6938	CHIK400_28_LEFT_2	2	+	GACAGGTACGCGCTTCAAGTTC	
+KP164568.1	7254	7277	CHIK400_28_RIGHT_2	2	-	CGCTAACGGTTTGCCCAGTTTA	
+KP164568.1	7168	7191	CHIK400_29_LEFT_0	1	+	AGCTCCCTACTTTTGTGGAGGG	
+KP164568.1	7472	7494	CHIK400_29_RIGHT_0	1	-	GACCGCCGTACAAGGTTATGAC	
+KP164568.1	7413	7435	CHIK400_30_LEFT_0	2	+	TAATGTCCATGGCCACCTTTGC	
+KP164568.1	7747	7769	CHIK400_30_RIGHT_0	2	-	TATTCTTCCGATTCTTGCGCGG	
+KP164568.1	7684	7706	CHIK400_31_LEFT_0	1	+	CAACTTGCCCAGCTGATCTCAG	
+KP164568.1	7980	8002	CHIK400_31_RIGHT_0	1	-	ATCGATGGTCCCCTTTACGTGT	
+KP164568.1	7929	7951	CHIK400_32_LEFT_0	2	+	TAAGGTAACAGGTTACGCGTGC	
+KP164568.1	8257	8279	CHIK400_32_RIGHT_0	2	-	TACGGGCTCCTTCATTAGCTCC	
+KP164568.1	8210	8232	CHIK400_33_LEFT_2	1	+	GACCGATCTTCGACAACAAGGG	
+KP164568.1	8510	8532	CHIK400_33_RIGHT_2	1	-	GCGTCGGGGAGAACATGTTAAG	
+KP164568.1	8441	8465	CHIK400_34_LEFT_0	2	+	GAGAAAACCTTGCGCATGCTTG	
+KP164568.1	8749	8771	CHIK400_34_RIGHT_0	2	-	CTGCTGGCATGTGATTGTCCAT	
+KP164568.1	8685	8707	CHIK400_35_LEFT_0	1	+	CCAGGTTTCCTTGCAAATCGGA	
+KP164568.1	8983	9010	CHIK400_35_RIGHT_0	1	-	GTACGTGCTGCAAGGTAGTTCC	
+KP164568.1	8912	8934	CHIK400_36_LEFT_1	2	+	CATGTACGCACCCATTTCACCA	
+KP164568.1	9270	9293	CHIK400_36_RIGHT_1	2	-	GGTCCCCGAATTCAGCATTACG	
+KP164568.1	9198	9220	CHIK400_37_LEFT_0	1	+	CTGCAAGGTCGATCAATGCCAT	
+KP164568.1	9521	9543	CHIK400_37_RIGHT_0	1	-	TCATTGTTACCCCACGTGACCT	
+KP164568.1	9467	9489	CHIK400_38_LEFT_0	2	+	AGTGGGTGACGCATAAGAAGGA	
+KP164568.1	9731	9754	CHIK400_38_RIGHT_0	2	-	TGGTGTCAGTTCGTACGGTGTA	
+KP164568.1	9670	9692	CHIK400_39_LEFT_0	1	+	ATACTCCTGTCGATGGTGGGTG	
+KP164568.1	9996	10018	CHIK400_39_RIGHT_0	1	-	CGGGATCACTGTTACGTGTTCG	
+KP164568.1	9952	9974	CHIK400_40_LEFT_0	2	+	TTTTTAGCCGTACTGAGCGTCG	
+KP164568.1	10272	10294	CHIK400_40_RIGHT_0	2	-	ATTTTCGGTGTCGCAGAAGCAG	
+KP164568.1	10181	10203	CHIK400_41_LEFT_0	1	+	GCGGTACAGCAGAGTGTAAGGA	
+KP164568.1	10520	10542	CHIK400_41_RIGHT_0	1	-	GTCGCCTTTGTACACCACGATT	
+KP164568.1	10446	10468	CHIK400_42_LEFT_0	2	+	CCATGCCGTCACAGTTAAGGAC	
+KP164568.1	10782	10804	CHIK400_42_RIGHT_0	2	-	AGTTCATCGCTCTTACCGGGTT	
+KP164568.1	10717	10739	CHIK400_43_LEFT_0	1	+	ATTGGCTAAAAGAACGAGGGGC	
+KP164568.1	10994	11016	CHIK400_43_RIGHT_0	1	-	TTCCCGAATAGTGACGGCGTTA	
+KP164568.1	10909	10931	CHIK400_44_LEFT_0	2	+	GCACCCATTCCTCAGACTTTGG	
+KP164568.1	11285	11307	CHIK400_44_RIGHT_0	2	-	CCTGCTAAACGACACGCATAGC