Initialize master

.Rbuildignore

@@ -0,0 +1,7 @@
+^.*\.Rproj$
+^\.Rproj\.user$
+^\.travis\.yml$
+^codecov\.yml$
+^appveyor\.yml$
+^\.github$
+^docs

.appveyor.yml

@@ -0,0 +1,53 @@
+# DO NOT CHANGE the "init" and "install" sections below
+
+# Download script file from GitHub
+init:
+  ps: |
+        $ErrorActionPreference = "Stop"
+        Invoke-WebRequest http://raw.github.com/krlmlr/r-appveyor/master/scripts/appveyor-tool.ps1 -OutFile "..\appveyor-tool.ps1"
+        Import-Module '..\appveyor-tool.ps1'
+
+install:
+  ps: Bootstrap
+
+cache:
+  - C:\RLibrary
+
+environment:
+  NOT_CRAN: true
+  # env vars that may need to be set, at least temporarily, from time to time
+  # see https://github.com/krlmlr/r-appveyor#readme for details
+  # USE_RTOOLS: true
+  # R_REMOTES_STANDALONE: true
+
+# Adapt as necessary starting from here
+
+build_script:
+  - travis-tool.sh install_deps
+
+test_script:
+  - Rscript -e "roxygen2::roxygenize('.', roclets = c('rd', 'collate', 'namespace', 'vignette'))"
+  - travis-tool.sh run_tests
+
+on_failure:
+  - 7z a failure.zip *.Rcheck\*
+  - appveyor PushArtifact failure.zip
+
+artifacts:
+  - path: '*.Rcheck\**\*.log'
+    name: Logs
+
+  - path: '*.Rcheck\**\*.out'
+    name: Logs
+
+  - path: '*.Rcheck\**\*.fail'
+    name: Logs
+
+  - path: '*.Rcheck\**\*.Rout'
+    name: Logs
+
+  - path: '\*_*.tar.gz'
+    name: Bits
+
+  - path: '\*_*.zip'
+    name: Bits

.codecov.yml

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+comment: false
+
+coverage:
+  status:
+    project:
+      default:
+        target: auto
+        threshold: 1%
+    patch:
+      default:
+        target: auto
+        threshold: 1%

.github/.gitignore

@@ -0,0 +1 @@
+*.html

.github/workflows/pkgdown.yaml

@@ -0,0 +1,51 @@
+on:
+  push:
+    branches: master
+
+name: pkgdown
+
+jobs:
+  pkgdown:
+    runs-on: macOS-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-r@master
+
+      - uses: r-lib/actions/setup-pandoc@master
+
+      - name: Query dependencies
+        run: |
+          install.packages('remotes')
+          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
+          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
+        shell: Rscript {0}
+
+      - name: Cache R packages
+        uses: actions/cache@v1
+        with:
+          path: ${{ env.R_LIBS_USER }}
+          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
+          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
+
+      - name: Install dependencies
+        run: |
+          install.packages("remotes")
+          remotes::install_deps(dependencies = TRUE)
+          remotes::install_dev("pkgdown")
+          install.packages(c("devtools", "roxygen2"))
+        shell: Rscript {0}
+
+      - name: Roxygenize        
+        run: |
+          devtools::document(roclets = c('rd', 'collate', 'namespace', 'vignette'))
+        shell: Rscript {0}
+
+      - name: Install package
+        run: R CMD INSTALL .
+
+      - name: Deploy package
+        run: pkgdown::deploy_to_branch(new_process = FALSE)
+        shell: Rscript {0}

.gitignore

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+.Rproj.user
+.Rhistory
+.RData
+.Ruserdata
+man/*.Rd
+docs/
+NAMESPACE

.travis.yml

@@ -0,0 +1,24 @@
+language: R
+sudo: false
+cache: packages
+warnings_are_errors: true
+
+os:
+  - linux
+  - osx
+
+r:
+  - oldrel
+  - release
+  - devel
+
+jobs:
+  exclude:
+  - os: osx
+    r: devel
+
+before-script:
+- R -e "install.packages ('roxygen2'); roxygen2::roxygenize('.', roclets = c('rd', 'collate', 'namespace', 'vignette'))"
+
+after-success:
+- Rscript -e "covr::codecov()"

DESCRIPTION

@@ -0,0 +1,25 @@
+Package: 
+Type: Package
+Title: 
+Version: 0.0.0.9000
+Maintainer: Erick Oduniyi <[email protected]>
+Authors@R: c(
+    person("Claudia",   "Beleites",  role = c("aut"), email = "[email protected]"),
+    person("Erick",     "Oduniyi", role = c("aut","cre"), email = "[email protected]")),
+    person("Vilmantas", "Gegzna", role = c("aut"))),
+    person("Bryan",     "Hanson", role = c("aut")))
+Description: 
+License: MIT + file LICENSE
+Encoding: UTF-8
+LazyLoad: yes
+LazyData: yes
+Depends:
+    hyperSpec
+Imports: 
+    hySpc.testthat
+Suggests:
+    knitr,
+VignetteBuilder: knitr
+RoxygenNote: 7.1.0
+Roxygen: list(markdown = TRUE)
+Collate: 

LICENSE

@@ -0,0 +1,2 @@
+YEAR: 2020-
+COPYRIGHT HOLDER: the SKELETON authors - see file DESCRIPTION

NEWS.md

@@ -0,0 +1,15 @@
+# SKELETON
+
+## Acknowledgements
+The `hyperSpec` team gratefully acknowledges support from the Google Summer of Code program, which sponsored student Erick Oduniyi during summer 2020.
+Erick and the team carried out a significant overhaul of `hyperSpec` which led to this release.
+
+# Version
+
+## User-visible Changes
+
+### Bug Fixes
+### Breaking Changes
+### New Functions
+
+## Internal Changes

R/unittestdata.R

@@ -0,0 +1,5 @@
+#' package internal unit test data
+#' @noRd
+{
+
+}

README.md

@@ -0,0 +1,27 @@
+# hyperSpec Package Skeleton
+<!-- badges: start -->
+<!--
+[![CRAN
+status](https://www.r-pkg.org/badges/version/SKELETON)](https://cran.r-project.org/package=SKELETON)
+[![Build Status on Travis](https://travis-ci.com/r-hyperspec/SKELETON.svg?branch=master) (master; Linux, Mac))](https://travis-ci.com/github/r-hyperspec/SKELETON)
+[![Build status on Appveyor](https://ci.appveyor.com/api/projects/status/APPVEYOR-CODE?svg=true) (Windows)](https://ci.appveyor.com/project/r-hyperspec/SKELETON)
+[![Project Status: WIP – Initial development is in progress, but there has not yet been a stable, usable release suitable for the public.](https://www.repostatus.org/badges/latest/wip.svg)](https://www.repostatus.org/#wip)
+[![Codecov test coverage](https://codecov.io/gh/r-hyperspec/SKELETON/branch/master/graph/badge.svg) (master)](https://codecov.io/gh/r-hyperspec/SKELETON?branch=master)
+-->
+<!-- badges: end -->
+
+package skeleton for hyperSpec ecosystem
+
+When creating a repo, 
+
+- replace `SKELETON` with new package name
+  - [ ] `LICENSE`
+  - [ ] `NEWS.md`
+  - [ ] `README.md`
+    - appveyor badge needs appveyor code
+  - [ ] `tests/testthat.R`
+  - [ ] `tests/testthat/test_attached.R`
+
+- create issue labels
+  - [ ] apply github labels (in `github-helpers/`), 
+  - [ ] delete `github-helpers/`

github-helpers/get-skeleton-labels.sh

@@ -0,0 +1,8 @@
+#!/bin/bash
+
+# get labels from hySpc.skeleton package
+curl https://api.github.com/repos/r-hyperspec/hySpc.skeleton/labels |\
+grep -ve '\"id\":' - |\
+grep -ve '\"node_id\":' - |\
+grep -ve '\"url\":' - |\
+grep -ve '\"default\":' - > github-helpers/hySpc.skeleton.labels.json

github-helpers/hySpc.skeleton.labels.json

@@ -0,0 +1,117 @@
+[
+  {
+    "name": "IO",
+    "color": "8B4513",
+    "description": "Input and output (read/write) related functions"
+  },
+  {
+    "name": "Proposal",
+    "color": "5319e7",
+    "description": ""
+  },
+  {
+    "name": "blocked :no_entry_sign:",
+    "color": "f9646e",
+    "description": "Cannot be started until another issue is resolved"
+  },
+  {
+    "name": "bug :bomb:",
+    "color": "ee0701",
+    "description": "something is not working as it should"
+  },
+  {
+    "name": "confirmed",
+    "color": "b60205",
+    "description": "Someone else besides the one who originally described the issue also has this issue."
+  },
+  {
+    "name": "datasets :date:",
+    "color": "edac15",
+    "description": "Related to datasets"
+  },
+  {
+    "name": "documentation :blue_book:",
+    "color": "000080",
+    "description": ""
+  },
+  {
+    "name": "duplicate",
+    "color": "cfd3d7",
+    "description": "This issue or pull request already exists"
+  },
+  {
+    "name": "enhancement",
+    "color": "84b6eb",
+    "description": "New feature or request"
+  },
+  {
+    "name": "good first issue",
+    "color": "7057ff",
+    "description": "Good for newcomers"
+  },
+  {
+    "name": "guideline",
+    "color": "57dd4d",
+    "description": ""
+  },
+  {
+    "name": "help wanted",
+    "color": "128A0C",
+    "description": "Extra attention is needed"
+  },
+  {
+    "name": "invalid",
+    "color": "e6e6e6",
+    "description": "This doesn't seem right"
+  },
+  {
+    "name": "plots :chart_with_upwards_trend:",
+    "color": "a3e07d",
+    "description": "related to plotting, graphical display and interaction with graphical display"
+  },
+  {
+    "name": "poll :arrow_up: :arrow_down:",
+    "color": "baa5f7",
+    "description": "A question where everyone can vote"
+  },
+  {
+    "name": "priority high/urgent",
+    "color": "FF0000",
+    "description": ""
+  },
+  {
+    "name": "priority low",
+    "color": "C0ffA0",
+    "description": ""
+  },
+  {
+    "name": "priority medium",
+    "color": "FFC000",
+    "description": ""
+  },
+  {
+    "name": "question :grey_question:",
+    "color": "800080",
+    "description": "Further information is requested"
+  },
+  {
+    "name": "ready :heavy_check_mark:",
+    "color": "60ff60",
+    "description": ""
+  },
+  {
+    "name": "unit test",
+    "color": "ffff00",
+    "description": ""
+  },
+  {
+    "name": "vignette :green_book:",
+    "color": "ffe998",
+    "description": ""
+  },
+  {
+    "name": "wontfix",
+    "color": "ffffff",
+    "description": "This will not be worked on"
+  }
+]

github-helpers/put-skeleton-labels.sh

@@ -0,0 +1,16 @@
+    # hySpc.skeleton shell script 
+    # author: Erick Oduniyi 
+
+    # Make sure github-labels node package is installed
+    npm install github-labels -g
+
+    # Get Github username and repo name
+    echo "enter username and name of derived package repository (username/repo)"
+    read pkg_repo
+
+    # Get personal access tokens
+    echo "enter Personal access tokens"
+    read token
+
+    # Pass the skeleton labels to the derived package repo
+    labels -c hypSpc.skeleton.labels.json pkg_repo -t token