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Fix Roxygen2 related issues #128

Fix Roxygen2 related issues

Fix Roxygen2 related issues #128

# READ-ONLY FILE
#
# Original file resides in r-hyperspec/pkg-skelton.
# DO NOT EDIT in any other repo as these changes will be overwritten.
# Edit at r-hyperspec/pkg-skelton, then push there and
# this file will be deployed to the other repos.
#
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# NOTE 1:
# This script automatically detects the repository in which it is run.
# No edits are needed except in the "Install Dependencies" section where
# one may need to install additional packages according to the needs.
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# NOTE 2:
# Each "- name:" task below starts from the same directory, which is:
# /home/runner/work/${{ REPOSITORY_NAME }}/${{ REPOSITORY_NAME }}
# e.g.:
# /home/runner/work/hyperSpec/hyperSpec
# Each task is run in its own shell starting from this directory.
# This means you have to navigate to the desired directory for each task.
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# NOTE 3:
# If more than one branch given to trigger the workflow,
# one may stomp on the other during deployment, so use only one branch.
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
on:
workflow_dispatch:
push:
branches: [develop, auto-update-test]
name: Publish to pkg-repo (drat)
jobs:
drat:
if: ${{ github.event.repository.name }} != "pkg-skeleton"
runs-on: ${{ matrix.config.os }}
name: "drat: ${{ matrix.config.os }} (R-${{ matrix.config.r }})"
strategy:
fail-fast: false
matrix:
config:
- {os: ubuntu-latest, r: 'release'}
# - {os: macOS-latest, r: 'release'}
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: ${{ matrix.config.rspm }}
REPO: ${{ github.event.repository.name }}
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
CACHE_VERSION: 1
steps:
- uses: actions/checkout@v3
- name: Info
run: |
echo "GitHub actor: ${{ github.actor }}"
- uses: r-lib/actions/setup-pandoc@v2
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true
extra-repositories: "https://r-hyperspec.github.io/pkg-repo/"
- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::drat, any::devtools, local::.
needs: check
- name: Roxygenize
shell: Rscript {0}
run: |
roxygen2::roxygenize()
- name: Build source package
shell: Rscript {0}
run: |
dir.create("check", showWarnings = FALSE)
devtools::build(path = "check")
# Above are the steps to build package
# Below are the steps to deploy to pkg-repo
- name: Configure git
# The following configure step is from
# https://stackoverflow.com/a/60548651/633251
env:
TOKEN: ${{ secrets.DEPLOY_TOKEN }}
run: |
git config --global url."https://${TOKEN}:[email protected]/".insteadOf "https://github.com/"
git config --global user.email "[email protected]"
git config --global user.name "${REPO} Deploy Bot"
- name: Drat -- clone r-hyperspec/pkg-repo
if: success()
run: |
rm -rf tmp-pkg-repo-dir
git clone https://github.com/r-hyperspec/pkg-repo.git tmp-pkg-repo-dir
cd tmp-pkg-repo-dir
git checkout gh-pages
- name: Drat -- insert
if: success()
shell: Rscript {0}
run: |
targz <- list.files(
path = "check",
pattern = "\\.tar\\.gz",
full.names = TRUE
)
drat::insertPackage(
file = targz,
repodir = "tmp-pkg-repo-dir",
action = "archive"
)
- name: Drat -- commit and push
if: success()
run: |
cd tmp-pkg-repo-dir
git add *
# .tar.gz files are globally blocked (git ignored) by git,
# must add manually and force it
git add -f *.tar.gz
git commit -m "Automated deploy from ${REPO}"
git push origin gh-pages