Skip to content

Commit

Permalink
update docs
Browse files Browse the repository at this point in the history
  • Loading branch information
sepro committed Jan 16, 2024
1 parent 979887d commit 85644e6
Showing 1 changed file with 13 additions and 0 deletions.
13 changes: 13 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -26,6 +26,10 @@ renv::install("raeslab/LRdbRDA")

## Usage

To run RLdbRDA two dataframes are needed: one with the microbial abundances and one with metadata. In both cases rows should be samples/subject and columns microbiota and metadata features respectively.

Off note, it is strongly recommended to **remove strongly correlated features from the metadata** before running RLdbRDA. Furthermore, RLdbRDA cannot handle missing values in the metadata. **Features with many missing values should be excluded** first, next **samples/subjects with incomplete cases should be removed** (or imputed if possible).

### Example

```R
Expand All @@ -47,4 +51,13 @@ g

![bar plot showing the single and cumulative effect of various features on the varespec dataset included in vegan](./docs/img/rldbrda_example_output.png)

## Contributing

Contributions are what make the open source community such an amazing place to learn, inspire, and create. Any contributions you make are **greatly appreciated**.

* Found a bug or have some suggestions? Open an [issue](https://github.com/raeslab/RLdbRDA/issues).
* Pull requests are welcome! Though open an [issue](https://github.com/raeslab/RLdbRDA/issues) first to discuss which features/changes you wish to implement.

## Contact

RLdbRDA was developed by [Sebastian Proost](https://sebastian.proost.science/) at the [RaesLab](https://raeslab.sites.vib.be/en) and was adopted from code written by [Sara Vieira-Silva](https://saravsilva.github.io/).

0 comments on commit 85644e6

Please sign in to comment.