2023 HBHL BigBrain workshop: From BigBrains to BrainSpaces

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Installing the python environment on Linux

For Linux, if want to have the same libraries used for this tutorial installed on your system you can run:

wget https://raw.githubusercontent.com/rcruces/2023_BigBrain_workshop_BigBrains-BrainSpaces/main/environment.yml
conda env create -f environment.yml

Installing the python environment on MacOS

For MacOSX,

wget https://raw.githubusercontent.com/rcruces/2023_BigBrain_workshop_BigBrains-BrainSpaces/main/mac_env.yml
conda env create -f mac_env.yml

Then using brew install git-annex:

brew install jupyterlab
brew install datalad
pip install RISE