Releases · reanahub/reana

Users:
- Adds support for Rucio authentication for workflow jobs.
- Adds support for Kerberos authentication for workflow orchestration.
- Adds support for specifying slurm_partition and slurm_time for Slurm compute backend jobs.
- Adds support for XRootD remote file locations in Snakemake workflow specification definitions.
- Adds support for Python 3.11.
- Adds Launch on REANA page allowing the submission of workflows via badge-clicking.
- Adds notifications to inform users when critical levels of quota usage is reached.
- Adds 404 Not Found error page.
- Adds tab titles to all the pages.
- Adds the REANA_WORKSPACE environment variable to jupyter notebooks and terminals.
- Adds option to sort workflows by most disk and cpu quota usage to the workflow list endpoint.
- Adds support for specifying and listing workspace file retention rules.
- Adds support for .gitignore and .reanaignore to specify files that should not be uploaded to REANA.
- Adds retention-rules-list command to list the retention rules of a workflow.
- Changes REANA specification to allow specifying retention_days for the workflow.
- Changes default Slurm partition to inf-short.
- Changes GitLab integration to also retrieve user's projects that are in groups and subgroups.
- Changes the workflow-details page to show the logs of the workflow engine.
- Changes the workflow-details page to show file sizes in a human-readable format.
- Changes the workflow-details page to show the workspace's retention rules.
- Changes the workflow-details page to show the duration of the workflow's jobs.
- Changes the workflow-details page to display a label of the workflow launcher URL remote origin.
- Changes the workflow-details page to periodically refresh the content of the page.
- Changes the workflow-details page to refresh after the deletion of a workflow.
- Changes the workflow-list page to add a way to hide deleted workflows.
- Changes the workflow-list page to add new workflows sorting options by most used disk and cpu quota.
- Changes the deletion of a workflow to always clean up the workspace and to update the user disk quota usage.
- Changes the CWD of jupyter's terminals to the directory of the workflow's workspace.
- Changes percentage ranges used to calculate the health status of user resource quota usage.
- Changes create and restart commands to always upload the REANA specification file.
- Changes delete command to always delete the workflow's workspace.
- Changes delete_workflow Python API function to always delete the workflow's workspace.
- Changes download command to add the possibility to write files to the standard output via -o - option.
- Changes list command to hide deleted workflows by default.
- Changes list command to allow displaying deleted workflows via --all and --show-deleted-runs options.
- Changes list and status commands to allow displaying the duration of workflows with the --include-duration option.
- Changes mv command to allow moving files while a workflow is running.
- Changes upload command to prevent uploading symlinks.
- Changes validation --environment command to use Docker registry v2 APIs to check that a Docker image exists in DockerHub.
- Fixes list command to highlight the workflow specified in REANA_WORKON correctly.
- Fixes secrets-delete command error message when deleting non existing secrets.
- Fixes start command to report failed workflows as errors.
- Fixes start and run commands to correctly follow the execution of the workflow until termination.
- Fixes status command to respect output format provided by the --format option.
- Fixes upload command to report when input directories are listed under the files section in the REANA specification file and vice versa.
- Fixes validate --environment command to detect illegal whitespace characters in Docker image names.
- Fixes Kerberos authentication for long-running workflows by renewing the Kerberos ticket periodically.
- Fixes status reporting for failed CWL and Snakemake jobs that were incorrectly considered successful.
- Fixes redirection chain for non-signed-in CERN SSO users to access the desired target page after sign-in.
- Fixes the ordering by size of the files showed in the Workspace tab of the workflow-details page.
- Fixes CERN OIDC authentication to possibly allow eduGAIN and social login users.
- Fixes wrong numbering of restarted workflows by limiting the number of times a workflow can be restarted to nine.
Administrators:
- Adds new configuration environment variable reana_server.environment.REANA_SCHEDULER_REQUEUE_COUNT to set workflow requeue count in case of scheduling errors or busy cluster situations.
- Adds "infinity" option to REANA_SCHEDULER_REQUEUE_COUNT to disable requeue count.
- Adds support for Kubernetes clusters 1.22, 1.23, 1.24, 1.25.
- Adds new configuration option workspaces.retention_rules.maximum_period to set a default period for workspace retention rules.
- Adds new configuration option workspaces.retention_rules.cronjob_schedule to set how often pending retention rules should be applied.
- Adds configuration environment variable reana_server.environment.REANA_RATELIMIT_SLOW to limit API requests to some protected endpoints e.g launch workflow.
- Adds configuration environment variable reana_server.environment.REANA_WORKFLOW_SCHEDULING_READINESS_CHECK_LEVEL to define checks that are performed to assess whether the cluster is ready to start new workflows.
- Adds new configuration option ingress.tls.self_signed_cert to enable the generation of a self-signed TLS certificate.
- Adds new configuration option ingress.tls.secret_name to specify the name of the Kubernetes secret containing the TLS certificate to be used.
- Adds support for configuring an additional volume to be used by the database and the message broker.
- Adds new configuration option maintenance.enabled to scale down the cluster for maintenance.
- Adds support for Unicode characters inside email body.
- Adds queue-consume command that can be used by REANA administrators to remove specific messages from the queue.
- Adds retention-rules-apply command that can be used by REANA administrators to apply pending retention rules.
- Adds retention-rules-extend command that can be used by REANA administrators to extend the duration of active retentions rules.
- Adds check-workflows command that can be used by REANA administrators to check for out-of-sync workflows and interactive sessions.
- Changes configuration option quota.workflow_termination_update_policy to deactivate workflow termination accounting by default.
- Changes Helm template to use PostgreSQL 12.13 version.
- Changes the base image for most of the components to Ubuntu 20.04 LTS and reduces final Docker image size by removing build-time dependencies.
- Changes reana-auth-vomsproxy sidecar to the latest stable version to support client-side proxy file generation technique and ESCAPE VOMS.
- Changes OAuth configuration to enable the new CERN SSO.
- Changes job status consumer to improve logging for not-alive workflows.
- Changes the deployment of interactive sessions to improve security by not automounting the Kubernetes service account token.
- Changes the deployment of job-controller to avoid unnecessarily mounting the database's directory.
- Changes the announcements to support limited HTML markup.
- Changes REANA specification loading functionality to allow specifying different working directories.
- Changes global setting of maximum number of parallel jobs to 300 for Snakemake workflow engine.
- Fixes job status consumer by discarding invalid job IDs.
- Fixes GitLab integration error reporting in case user exceeds CPU or Disk quota usage limits.
- Fixes issue when irregular number formats are passed to REANA_SCHEDULER_REQUEUE_COUNT configuration environment variable.
- Fixes quota updater to reduce memory usage.
- Fixes conversion of possibly-negative resource usage values to human-readable formats.
- Fixes disk quota updater to prevent setting negative disk quota usage values.
- Removes support for Kubernetes version prior to 1.19.
Developers:
- Adds OpenAPI specification support for launch endpoint that allows running workflows from remote sources.
- Adds OpenAPI specification support for get_workflow_retention_rules endpoint that allows to retrieve the workspace file retention rules of a workflow.
- Adds the remote origin of workflows submitted via Launch-on-REANA (launcher_url) to the workflow list endpoint.
- Adds common utility functions for managing workspace files to reana-commons.
- Changes default consumer prefetch count to handle 10 messages instead of 200 in order to reduce the probability of 406 PRECONDITION errors on message acknowledgement.
- Changes git-upgrade-shared-modules to generate the correct upper-bound in setup.py.
- Changes REANA specification loading and validation functionalities by porting some of the logic to reana-commons.
- Changes OpenAPI specification to include missing response schema elements.
- Changes the Kubernetes Python client to use the networking/v1 API.
- Changes the deployment of interactive sessions to use networking/v1 Kubernetes API.
- Changes to Flask v2.
- Changes /api/info endpoint to also include the kubernetes maximum memory...

Users:
- Adds support for specifying kubernetes_job_timeout for Kubernetes compute backend jobs.
- Adds Kubernetes job memory limits validation before accepting workflows for execution.
- Adds support for HTML preview of workspace files in the web user interface.
- Adds an option to search for concrete file names in the workflow's workspace web user interface page.
- Changes the Cluster Health web interface page to display the cluster status information based on resource availability rather than only usage.
- Changes info command to include the list of supported compute backends.
- Fixes workflow stuck in pending status due to early Yadage failures.
- Fixes formatting of error messages and sets appropriate exit status codes.
Administrators:
- Adds a new configuration option to set the default job timeout value for the Kubernetes compute backend jobs (kubernetes_jobs_timeout_limit).
- Adds a new configuration option to set maximum job timeout that users can assign to their jobs for the Kubernetes compute backend (kubernetes_jobs_max_user_timeout_limit).
- Adds new configuration option compute_backends to specify the supported list of compute backends for validation purposes.
- Adds new configuration option reana_server.uwsgi.log_all to toggle the logging of all the HTTP requests.
- Adds new configuration options reana_server.uwsgi.log_4xx and reana_server.uwsgi.log_5xx to only log HTTP error requests, i.e. HTTP requests with status code 4XX and 5XX. To make this configuration effective reana_server.uwsgi.log_all must be false.
- Adds new configuration options node_label_infrastructuremq and node_label_infrastructuredb to have the possibility to run the Message Broker and the Database pods in specific nodes.
- Changes uWSGI configuration to log all HTTP requests in REANA-Server by default.
- Changes quota.disk_update to quota.periodic_update_policy to also update the CPU quota. Keeps quota.disk_update for backward compatibility.
- Changes the name of configuration option quota.termination_update_policy to quota.workflow_termination_update_policy. Keeps quota.termination_update_policy for backward compatibility.
Developers:
- Adds workflow name validation to the create_workflow endpoint, restricting special characters like dots.
- Changes /api/info endpoint to return a list of supported compute backends.
- Changes /api/status endpoint to calculate the cluster health status based on the availability instead of the usage.
- Changes the way of determining Snakemake job statuses, polling the Job Controller API instead of checking local files.

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Releases: reanahub/reana

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