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Achievements

Achievement: Pair Extraordinairex2Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLOAchievement: Starstruckx2Achievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex2Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLOAchievement: Starstruckx2Achievement: Arctic Code Vault Contributor

Organizations

@ga4gh @hgvs @biocommons @clingen-data-model

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  1. biocommons/hgvs Public

    Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

    Python 263 95

  2. biocommons/uta Public

    Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image

    Python 63 25

  3. biocommons/biocommons.seqrepo Public

    non-redundant, compressed, journalled, file-based storage for biological sequences

    Python 40 34

  4. biocommons/eutils Public

    simplified searching, fetching, and parsing records from NCBI using their E-utilities interface

    Python 59 27

  5. biocommons/bioutils Public

    provides common tools and lookup tables used primarily by the hgvs and uta packages

    Python 22 18

  6. ga4gh/vrs Public

    Extensible specification for representing and uniquely identifying biological sequence variation

    Jupyter Notebook 87 37

330 contributions in the last year

Contribution Graph
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Activity overview

Contributed to HGVSnomenclature/hgvs-nomenclature, biocommons/biocommons.example, biocommons/hgvs and 13 other repositories
Loading A graph representing reece's contributions from March 24, 2024 to March 27, 2025. The contributions are 58% commits, 23% code review, 15% pull requests, 4% issues.

Contribution activity

March 2025

Created 4 commits in 3 repositories

Created a pull request in biocommons/bioutils that received 5 comments

implement caller-selectable sequence type for ensembl seqfetcher

Implements the ability for seqfetcher callers to specify additional arguments to seqfetcher, and particularly to specify the type of sequence for e…

+450 −34 lines changed • 5 comments
Opened 3 other pull requests in 2 repositories
Reviewed 8 pull requests in 4 repositories

Created an issue in HGVSnomenclature/hgvs-nomenclature that received 6 comments

Address strict DNSSEC policy issues

We received this report in the mailing list: Employees at the Radboudumc medical Center in the Netherlands are unable to open the new website hgvs…

6 comments
Opened 4 other issues in 2 repositories
1 contribution in private repositories Mar 26
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