The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, r-lib/actions/setup-pandoc@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Fortran 2018 deleted feature: Arithmetic IF statement at (1)

Fortran 2018 deleted feature: Arithmetic IF statement at (1)

Fortran 2018 deleted feature: Arithmetic IF statement at (1)

Fortran 2018 deleted feature: Arithmetic IF statement at (1)

Fortran 2018 deleted feature: Arithmetic IF statement at (1)

r-lib/actions/setup-pandoc@v1 is deprecated. Please update your workflow to use the 'v2' version.

file=R/check_error_measure_params.R,line=32,col=6,[indentation_linter] Indentation should be 8 spaces but is 6 spaces.

file=R/check_experiments_candidates_have_same_beast2_files.R,line=60,col=12,[indentation_linter] Indentation should be 14 spaces but is 12 spaces.

file=R/check_inference_conditions.R,line=34,col=6,[indentation_linter] Indentation should be 8 spaces but is 6 spaces.

file=R/check_inference_conditions.R,line=41,col=6,[indentation_linter] Indentation should be 8 spaces but is 6 spaces.

file=R/check_is_ns_beast2_pkg_installed.R,line=36,col=6,[indentation_linter] Indentation should be 4 spaces but is 6 spaces.

file=R/check_pir_out.R,line=47,col=5,[indentation_linter] Indentation should be 4 spaces but is 5 spaces.

file=R/check_sim_tral_fun.R,line=18,col=6,[indentation_linter] Indentation should be 4 spaces but is 6 spaces.

file=R/check_sim_twal_fun.R,line=36,col=6,[indentation_linter] Indentation should be 4 spaces but is 6 spaces.

file=R/check_sim_twin_tree_fun.R,line=26,col=6,[indentation_linter] Indentation should be 4 spaces but is 6 spaces.