v1.6.4

• pirouette is consistent with pirouette_article v1.3

v1.6.3

NEW FEATURES

• Added pir_rename_to_std to conformize all files created by a pirouette run
• Added 'pir_rename' to rename all files created by a pirouette run
• Depend on beautier v2.3.5 (for rename_mcmc_filenames)

MINOR IMPROVEMENTS

• Use at-least versions of packages, instead of exact versions
• Check if there is need for an evidence file. Will stop if there
  is an evidence filename specified without needing one and vice versa

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• Use new nodeSube v0.5 (2020-01-13) default arguments

v1.6.2

NEW FEATURES

• None

MINOR IMPROVEMENTS

• Process goodpractice feedback

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

v1.6.1

NEW FEATURES

• None

MINOR IMPROVEMENTS

• Improved documentation
• Increased code coverage
• Removed dead code

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

v1.6

Follow new beautier interface, in which the filenames are stored in the MCMC

v1.5.1

NEW FEATURES

• None

MINOR IMPROVEMENTS

• Use mcbette version in which a higher number of particles in
  Nested Sampling does result in a better marginal likelihood
  estimation

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

v1.3

NEW FEATURES

• Removed duplicate evidence_epsilon argument from est_evidences:
  use the epsilon supplied in the experiments' est_evidence_mcmc$epsilon

MINOR IMPROVEMENTS

• Better error message when using a CBS site model and too few taxa

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

v1.2

Twin alignments have an equal number of mutations (compared to the root sequence) as have the true alignments.

v1.1.7

Fixed bug in count_n_mutations

v1.1.6

• Follows new interfaces of dependencies