Update container uris in nextflow.config

robomics · May 30, 2024 · ce10b9d · ce10b9d
1 parent b8a9e76
commit ce10b9d
Showing 1 changed file with 14 additions and 14 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -30,49 +30,49 @@ params {
 }
 
 process {
-    container = 'containers/cache/robomics-call_tad_cliques-utils-1.0.0.img'
+    container = 'ghcr.io/robomics/call_tad_cliques/utils-1.0.0.img'
 
     withName:"SAMPLESHEET:CHECK_SYNTAX" {
-        container = 'containers/cache/robomics-call_tad_cliques-hictkpy-0.0.5.img'
+        container = 'ghcr.io/robomics/call_tad_cliques/hictkpy-0.0.5.img'
     }
     withName:"SAMPLESHEET:CHECK_FILES" {
-        container = 'containers/cache/robomics-call_tad_cliques-hictkpy-0.0.5.img'
+        container = 'ghcr.io/robomics/call_tad_cliques/hictkpy-0.0.5.img'
     }
 
     withName:"TADS:SELECT_NORMALIZATION_METHOD" {
-        container = 'containers/cache/robomics-call_tad_cliques-hictkpy-0.0.5.img'
+        container = 'ghcr.io/robomics/call_tad_cliques/hictkpy-0.0.5.img'
     }
     withName:"TADS:APPLY_NORMALIZATION" {
-        container = 'containers/cache/robomics-call_tad_cliques-hictkpy-0.0.5.img'
+        container = 'ghcr.io/robomics/call_tad_cliques/hictkpy-0.0.5.img'
     }
     withName:"TADS:HICEXPLORER_FIND_TADS" {
-        container = 'containers/cache/robomics-call_tad_cliques-hicexplorer-3.7.4.img'
+        container = 'ghcr.io/robomics/call_tad_cliques/hicexplorer-3.7.4.img'
     }
 
     withName:"NCHG:GENERATE_MASK" {
-        container = 'containers/cache/robomics-call_tad_cliques-bedtools-2.31.1.img'
+        container = 'ghcr.io/robomics/call_tad_cliques/bedtools-2.31.1.img'
     }
     withName:"NCHG:MASK_DOMAINS" {
-        container = 'containers/cache/robomics-call_tad_cliques-bedtools-2.31.1.img'
+        container = 'ghcr.io/robomics/call_tad_cliques/bedtools-2.31.1.img'
     }
     withName:"NCHG:COMPUTE" {
-        container = 'containers/cache/robomics-call_tad_cliques-nchg-c77e3e9.img'
+        container = 'ghcr.io/robomics/call_tad_cliques/nchg-c77e3e9.img'
     }
     withName:"NCHG:MERGE" {
-        container = 'containers/cache/robomics-call_tad_cliques-nchg-c77e3e9.img'
+        container = 'ghcr.io/robomics/call_tad_cliques/nchg-c77e3e9.img'
     }
     withName:"NCHG:FILTER" {
-        container = 'containers/cache/robomics-call_tad_cliques-nchg-c77e3e9.img'
+        container = 'ghcr.io/robomics/call_tad_cliques/nchg-c77e3e9.img'
     }
     withName:"NCHG:VIEW" {
-        container = 'containers/cache/robomics-call_tad_cliques-nchg-c77e3e9.img'
+        container = 'ghcr.io/robomics/call_tad_cliques/nchg-c77e3e9.img'
     }
 
     withName:"CLIQUES:CALL" {
-        container = 'containers/cache/robomics-call_tad_cliques-call-cliques-1.0.0.img'
+        container = 'ghcr.io/robomics/call_tad_cliques/call-cliques-1.0.0.img'
     }
     withName:"CLIQUES:PLOT_MAXIMAL_CLIQUE_SIZE" {
-        container = 'containers/cache/robomics-call_tad_cliques-plotting-1.0.0.img'
+        container = 'ghcr.io/robomics/call_tad_cliques/plotting-1.0.0.img'
     }
 
 }