Update binary location #7
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Compile and build binaries | |
| # | |
| # For updated Intel OneAPI URLs, see: | |
| # https://github.com/oneapi-src/oneapi-ci/blob/master/.github/workflows/build_all.yml | |
| name: Run tests | |
| on: | |
| workflow_dispatch: | |
| push: | |
| env: | |
| WINDOWS_BASEKIT_URL: https://registrationcenter-download.intel.com/akdlm/IRC_NAS/f5881e61-dcdc-40f1-9bd9-717081ac623c/intel-oneapi-base-toolkit-2025.2.1.46_offline.exe | |
| LINUX_BASEKIT_URL: https://registrationcenter-download.intel.com/akdlm/IRC_NAS/3b7a16b3-a7b0-460f-be16-de0d64fa6b1e/intel-oneapi-base-toolkit-2025.2.1.44_offline.sh | |
| jobs: | |
| #------------------------------------------------ | |
| ctest_linux_dyn_openblas: | |
| name: Run tests on Linux (openblas) | |
| runs-on: ubuntu-latest | |
| env: | |
| BRANCH_NAME: ${{ github.head_ref || github.ref_name }} | |
| PKGS: > | |
| libxerces-c-dev xsdcxx libboost-system-dev libboost-filesystem-dev libboost-timer-dev | |
| libboost-thread-dev libboost-program-options-dev libopenblas-dev liblapacke-dev gmt ghostscript | |
| steps: | |
| - name: Install dependencies | |
| shell: bash | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y ${{ env.PKGS }} | |
| - name: Check branch name | |
| shell: bash | |
| run: echo ${{ env.BRANCH_NAME }} | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ env.BRANCH_NAME }} | |
| - name: Build with CMake | |
| run: | | |
| cmake dynadjust -DBUILD_TESTING=ON | |
| make -j2 | |
| ls -la bin/ | |
| - name: Run tests | |
| run: | | |
| set +e | |
| ctest --output-on-failure --timeout 120 2>&1 | tee ctest_output.log | |
| CTEST_EXIT_CODE=${PIPESTATUS[0]} | |
| echo "CTEST_EXIT_CODE=$CTEST_EXIT_CODE" >> $GITHUB_ENV | |
| exit 0 | |
| - name: Parse test results and create annotations | |
| if: always() | |
| shell: bash | |
| run: | | |
| if [ -f ctest_output.log ]; then | |
| # Find the line with "tests passed" and get everything from there to the end | |
| SUMMARY_LINE=$(grep -n "tests passed" ctest_output.log | head -1 | cut -d: -f1) | |
| if [ -n "$SUMMARY_LINE" ]; then | |
| # Get the first line (the summary line) | |
| FIRST_LINE=$(tail -n +$SUMMARY_LINE ctest_output.log | head -1) | |
| # Get the multiline summary from the tests passed line onwards | |
| SUMMARY_CONTENT=$(tail -n +$SUMMARY_LINE ctest_output.log | grep -v "Errors while" | tr '\n' '\a') | |
| # Replace newlines with %0A for GitHub Actions annotation | |
| SUMMARY_CONTENT=$(echo "$SUMMARY_CONTENT" | tr '\a' '\n' | sed ':a;N;$!ba;s/\n/%0A/g') | |
| # Check if there are failed tests | |
| if grep -q "tests failed" ctest_output.log; then | |
| echo "::error title=Test results (openblas): $FIRST_LINE::$SUMMARY_CONTENT" | |
| else | |
| echo "::notice title=Test results (openblas): $FIRST_LINE::$SUMMARY_CONTENT" | |
| fi | |
| else | |
| echo "::error title=Test Error::Could not find test summary in ctest output" | |
| fi | |
| else | |
| echo "::error title=Test Error::Could not find ctest output file" | |
| fi | |
| #------------------------------------------------ | |
| ctest_linux_dyn_mkl: | |
| name: Run tests on Linux (mkl) | |
| runs-on: ubuntu-latest | |
| env: | |
| BRANCH_NAME: ${{ github.head_ref || github.ref_name }} | |
| PKGS: > | |
| libxerces-c-dev xsdcxx libboost-system-dev libboost-filesystem-dev libboost-timer-dev | |
| libboost-thread-dev libboost-program-options-dev gmt ghostscript | |
| steps: | |
| - name: Generate cache triggers | |
| shell: bash | |
| run: | | |
| echo ONEAPI_HASH=$(echo "${LINUX_BASEKIT_URL}" | md5sum | cut -f 1 -d" ") >> $GITHUB_ENV | |
| - name: Install dependencies | |
| shell: bash | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y ${{ env.PKGS }} | |
| - name: Cache Intel OneAPI | |
| id: cache-oneapi | |
| uses: actions/cache@v4 | |
| with: | |
| path: /opt/intel | |
| key: intel-oneapi-linux-${{ env.ONEAPI_HASH }} | |
| - name: Install Intel OneAPI | |
| if: steps.cache-oneapi.outputs.cache-hit != 'true' | |
| run: | | |
| curl -L $LINUX_BASEKIT_URL -o install.sh | |
| sudo sh install.sh -a --action install --components intel.oneapi.lin.mkl.devel --eula=accept -s | |
| - name: Check branch name | |
| shell: bash | |
| run: echo ${{ env.BRANCH_NAME }} | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ env.BRANCH_NAME }} | |
| - name: Build with CMake | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| cmake dynadjust -DBUILD_TESTING=ON | |
| make -j2 | |
| ls -la bin/ | |
| - name: Run tests | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| set +e | |
| ctest --output-on-failure --timeout 120 2>&1 | tee ctest_output.log | |
| CTEST_EXIT_CODE=${PIPESTATUS[0]} | |
| echo "CTEST_EXIT_CODE=$CTEST_EXIT_CODE" >> $GITHUB_ENV | |
| exit 0 | |
| - name: Parse test results and create annotations | |
| if: always() | |
| shell: bash | |
| run: | | |
| if [ -f ctest_output.log ]; then | |
| # Find the line with "tests passed" and get everything from there to the end | |
| SUMMARY_LINE=$(grep -n "tests passed" ctest_output.log | head -1 | cut -d: -f1) | |
| if [ -n "$SUMMARY_LINE" ]; then | |
| # Get the first line (the summary line) | |
| FIRST_LINE=$(tail -n +$SUMMARY_LINE ctest_output.log | head -1) | |
| # Get the multiline summary from the tests passed line onwards | |
| SUMMARY_CONTENT=$(tail -n +$SUMMARY_LINE ctest_output.log | grep -v "Errors while running" | tr '\n' '\a') | |
| # Replace newlines with %0A for GitHub Actions annotation | |
| SUMMARY_CONTENT=$(echo "$SUMMARY_CONTENT" | tr '\a' '\n' | sed ':a;N;$!ba;s/\n/%0A/g') | |
| # Check if there are failed tests | |
| if grep -q "tests failed" ctest_output.log; then | |
| echo "::error title=Test results (mkl): $FIRST_LINE::$SUMMARY_CONTENT" | |
| else | |
| echo "::notice title=Test results (mkl): $FIRST_LINE::$SUMMARY_CONTENT" | |
| fi | |
| else | |
| echo "::error title=Test Error::Could not find test summary in ctest output" | |
| fi | |
| else | |
| echo "::error title=Test Error::Could not find ctest output file" | |
| fi | |
| ctest_windows_dyn_mkl: | |
| name: Run tests on Windows (mkl) | |
| runs-on: windows-2025 | |
| env: | |
| BRANCH_NAME: ${{ github.head_ref || github.ref_name }} | |
| VCPKG_PACKAGES: boost-geometry boost-process boost-iostreams boost-spirit boost-system boost-filesystem boost-timer boost-thread boost-program-options boost-interprocess xerces-c vcpkg-tool-ninja | |
| VCPKG_INSTALLATION_ROOT: "C:/vcpkg" | |
| VCPKG_BINARY_SOURCES: "clear" | |
| ONEAPI_VERSION: "2025.2" | |
| steps: | |
| - name: Generate cache triggers | |
| shell: bash | |
| run: | | |
| echo VCPKG_HASH=$(echo "${VCPKG_PACKAGES}" | sed "s/ /_/g" | md5sum | cut -f 1 -d" ") >> $GITHUB_ENV | |
| echo ONEAPI_HASH=$(echo "${WINDOWS_BASEKIT_URL}" | md5sum | cut -f 1 -d" ") >> $GITHUB_ENV | |
| - name: Cache vcpkg | |
| id: cache-vcpkg | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.VCPKG_INSTALLATION_ROOT }}/installed | |
| key: vcpkg-${{ runner.os }}-${{ env.VCPKG_HASH }} | |
| - name: Cache Intel OneAPI | |
| id: cache-oneapi | |
| uses: actions/cache@v4 | |
| with: | |
| path: C:\Program Files (x86)\Intel\oneAPI | |
| key: intel-oneapi-${{ env.ONEAPI_HASH }} | |
| - name: Install vcpkg prerequisites | |
| if: steps.cache-vcpkg.outputs.cache-hit != 'true' | |
| shell: powershell | |
| run: | | |
| vcpkg.exe --triplet=x64-windows install ${{ env.VCPKG_PACKAGES }} | |
| Remove-Item -Recurse -Force ${{ env.VCPKG_INSTALLATION_ROOT }}/.git | |
| Remove-Item -Recurse -Force ${{ env.VCPKG_INSTALLATION_ROOT }}/buildtrees | |
| Remove-Item -Recurse -Force ${{ env.VCPKG_INSTALLATION_ROOT }}/downloads | |
| Remove-Item -Recurse -Force ${{ env.VCPKG_INSTALLATION_ROOT }}/.github | |
| Remove-Item -Recurse -Force ${{ env.VCPKG_INSTALLATION_ROOT }}/docs | |
| - name: List installed packages | |
| shell: powershell | |
| run: vcpkg.exe list | |
| - name: Install Intel OneAPI | |
| if: steps.cache-oneapi.outputs.cache-hit != 'true' | |
| shell: powershell | |
| run: | | |
| Write-Host "Installing Intel OneAPI..." | |
| $url = $env:WINDOWS_BASEKIT_URL | |
| $components = "intel.oneapi.win.mkl.devel" | |
| $tempExe = Join-Path $env:TEMP "webimage.exe" | |
| Write-Host "Downloading installer from $url..." | |
| curl.exe -L $url -o $tempExe | |
| Write-Host "Extracting installer..." | |
| $installerArgs = "-s -x -f webimage_extracted --log extract.log" | |
| $proc = Start-Process -FilePath $tempExe -ArgumentList $installerArgs -NoNewWindow -Wait -PassThru | |
| Remove-Item $tempExe -Force | |
| $bootstrapperPath = Join-Path -Path (Join-Path $PWD "webimage_extracted") "bootstrapper.exe" | |
| Write-Host "Listing available components..." | |
| $procBootstrap = Start-Process -FilePath $bootstrapperPath -ArgumentList "--list-components" -NoNewWindow -Wait -PassThru -RedirectStandardOutput components | |
| get-content components | |
| Write-Host "Running bootstrapper..." | |
| $bootstrapArgs = "-s --action install --components=$components --eula=accept -p=NEED_VS2017_INTEGRATION=0 -p=NEED_VS2019_INTEGRATION=0 -p=NEED_VS2022_INTEGRATION=0 --log-dir=." | |
| $procBootstrap = Start-Process -FilePath $bootstrapperPath -ArgumentList $bootstrapArgs -NoNewWindow -Wait -PassThru | |
| Remove-Item -Recurse -Force "webimage_extracted" | |
| - name: Check branch name | |
| shell: bash | |
| run: echo ${{ env.BRANCH_NAME }} | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ env.BRANCH_NAME }} | |
| path: "./src" | |
| - name: Download and install xsd | |
| working-directory: "./src" | |
| shell: bash | |
| run: | | |
| curl.exe -L -O https://www.codesynthesis.com/download/xsd/4.2/libxsd-4.2.0.tar.gz | |
| tar zxvf libxsd-4.2.0.tar.gz | |
| - name: Extract OneAPI version | |
| shell: powershell | |
| run: | | |
| # Extract version from URL (e.g., 2025.2.1 -> 2025.2) | |
| $url = "${{ env.WINDOWS_BASEKIT_URL }}" | |
| if ($url -match 'toolkit-(\d+\.\d+)\.\d+') { | |
| $version = $matches[1] | |
| echo "ONEAPI_VERSION=$version" >> $env:GITHUB_ENV | |
| Write-Host "Extracted OneAPI version: $version" | |
| } else { | |
| Write-Host "Failed to extract version, using default 2025.2" | |
| echo "ONEAPI_VERSION=2025.2" >> $env:GITHUB_ENV | |
| } | |
| - name: Build with CMake | |
| working-directory: "./src" | |
| shell: cmd | |
| run: | | |
| vcpkg.exe integrate install | |
| call "C:\Program Files (x86)\Intel\oneAPI\compiler\%ONEAPI_VERSION%\env\vars.bat" | |
| call "C:\Program Files (x86)\Intel\oneAPI\mkl\%ONEAPI_VERSION%\env\vars.bat" | |
| set XSDROOT=%cd%\libxsd-4.2.0 | |
| set VPKG_INCLUDE=${{ env.VCPKG_INSTALLATION_ROOT }}\installed\x64-windows\include | |
| set INCLUDE=%XSDROOT%;%VPKG_INCLUDE%;%INCLUDE% | |
| set UseEnv=true | |
| cmake -DUSE_MKL=ON ^ | |
| -DBUILD_TESTING=ON ^ | |
| -DVCPKG_MANIFEST_MODE=OFF ^ | |
| -DCMAKE_TOOLCHAIN_FILE"=${{ env.VCPKG_INSTALLATION_ROOT }}/scripts/buildsystems/vcpkg.cmake" ^ | |
| -G "Visual Studio 17 2022" -A x64 dynadjust | |
| cmake --build %cd% --config Release --parallel 2 | |
| dir bin\ | |
| - name: Run tests | |
| working-directory: "./src" | |
| shell: cmd | |
| run: | | |
| call "C:\Program Files (x86)\Intel\oneAPI\compiler\%ONEAPI_VERSION%\env\vars.bat" | |
| call "C:\Program Files (x86)\Intel\oneAPI\mkl\%ONEAPI_VERSION%\env\vars.bat" | |
| ctest --output-on-failure --timeout 120 -C Release > ctest_output.log 2>&1 | |
| echo CTEST_EXIT_CODE=%ERRORLEVEL% >> %GITHUB_ENV% | |
| exit /b 0 | |
| - name: Parse test results and create annotations | |
| if: always() | |
| working-directory: "./src" | |
| shell: bash | |
| run: | | |
| if [ -f ctest_output.log ]; then | |
| # Find the line with "tests passed" and get everything from there to the end | |
| SUMMARY_LINE=$(grep -n "tests passed" ctest_output.log | head -1 | cut -d: -f1) | |
| if [ -n "$SUMMARY_LINE" ]; then | |
| # Get the first line (the summary line) | |
| FIRST_LINE=$(tail -n +$SUMMARY_LINE ctest_output.log | head -1) | |
| # Get the multiline summary from the tests passed line onwards | |
| SUMMARY_CONTENT=$(tail -n +$SUMMARY_LINE ctest_output.log | grep -v "Errors while running" | tr '\n' '\a') | |
| # Replace newlines with %0A for GitHub Actions annotation | |
| SUMMARY_CONTENT=$(echo "$SUMMARY_CONTENT" | tr '\a' '\n' | sed ':a;N;$!ba;s/\n/%0A/g') | |
| # Check if there are failed tests | |
| if grep -q "tests failed" ctest_output.log; then | |
| echo "::error title=Test results (windows mkl): $FIRST_LINE::$SUMMARY_CONTENT" | |
| else | |
| echo "::notice title=Test results (windows mkl): $FIRST_LINE::$SUMMARY_CONTENT" | |
| fi | |
| else | |
| echo "::error title=Test Error::Could not find test summary in ctest output" | |
| fi | |
| else | |
| echo "::error title=Test Error::Could not find ctest output file" | |
| fi | |