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remove most urls from the readme
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sckott committed Oct 19, 2020
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33 changes: 14 additions & 19 deletions README.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -35,37 +35,34 @@ rOpenSci has a number of R packages to get either full text, metadata, or both f

Previously supported use cases, extracted out to other packages:

* Collect bits of articles that you actually need - moved to package [pubchunks][]
* Supplementary data from papers has been moved to the [suppdata][] package
* Collect bits of articles that you actually need - moved to package `pubchunks`
* Supplementary data from papers has been moved to the `suppdata`


It's easy to go from the outputs of `ft_get` to text-mining packages such as
[tm](https://cran.r-project.org/package=tm) and
[quanteda](https://cran.r-project.org/package=quanteda).
`tm` and `quanteda`

Data sources in `fulltext` include:

* [Crossref](https://www.crossref.org/) - via the `rcrossref` package
* [Public Library of Science (PLOS)](https://www.plos.org/) - via the `rplos` package
* Crossref - via the `rcrossref` package
* Public Library of Science (PLOS) - via the `rplos` package
* Biomed Central
* [arXiv](https://arxiv.org) - via the `aRxiv` package
* [bioRxiv](https://biorxiv.org/) - via the `biorxivr` package
* [PMC/Pubmed via Entrez](https://www.ncbi.nlm.nih.gov/) - via the `rentrez` package
* arXiv - via the `aRxiv` package
* bioRxiv - via the `biorxivr` package
* PMC/Pubmed via Entrez - via the `rentrez` package
* Scopus - internal tooling
* Semantic Scholar (https://www.semanticscholar.org/) - internal tooling
* Semantic Scholar - internal tooling
* Many more are supported via the above sources (e.g., _Royal Society Open Science_ is
available via Pubmed)
* We __will__ add more, as publishers open up, and as we have time...See the [master list here](https://github.com/ropensci/fulltext/issues/4#issuecomment-52376743)
* We __will__ add more, as publishers open up, and as we have time...See the issues

Authentication: A number of publishers require authentication via API key, and some even more
draconian authentication processes involving checking IP addresses. We are working on supporting
all the various authentication things for different publishers, but of course all the OA content
is already easily available. See the **Authentication** section in `?fulltext-package` after
loading the package.

We'd love your feedback. Let us know what you think in the issue tracker (https://github.com/ropensci/fulltext/issues)

Article full text formats by publisher: https://docs.ropensci.org/fulltext/articles/formats
We'd love your feedback. Let us know what you think in the issue tracker


## Installation
Expand Down Expand Up @@ -106,9 +103,9 @@ quanteda::corpus(x)

## Contributors

* Scott Chamberlain <https://github.com/sckott>
* Will Pearse <https://github.com/willpearse>
* Katrin Leinweber <https://github.com/katrinleinweber>
* Scott Chamberlain
* Will Pearse
* Katrin Leinweber

## Meta

Expand All @@ -119,7 +116,5 @@ quanteda::corpus(x)

[![rofooter](https://ropensci.org/public_images/github_footer.png)](https://ropensci.org)

[suppdata]: https://github.com/ropensci/suppdata
[pubchunks]: https://github.com/ropensci/pubchunks
[docs]: https://docs.ropensci.org/fulltext/
[ftbook]: https://books.ropensci.org/fulltext/
33 changes: 14 additions & 19 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -28,37 +28,34 @@ rOpenSci has a number of R packages to get either full text, metadata, or both f

Previously supported use cases, extracted out to other packages:

* Collect bits of articles that you actually need - moved to package [pubchunks][]
* Supplementary data from papers has been moved to the [suppdata][] package
* Collect bits of articles that you actually need - moved to package `pubchunks`
* Supplementary data from papers has been moved to the `suppdata`


It's easy to go from the outputs of `ft_get` to text-mining packages such as
[tm](https://cran.r-project.org/package=tm) and
[quanteda](https://cran.r-project.org/package=quanteda).
`tm` and `quanteda`

Data sources in `fulltext` include:

* [Crossref](https://www.crossref.org/) - via the `rcrossref` package
* [Public Library of Science (PLOS)](https://www.plos.org/) - via the `rplos` package
* Crossref - via the `rcrossref` package
* Public Library of Science (PLOS) - via the `rplos` package
* Biomed Central
* [arXiv](https://arxiv.org) - via the `aRxiv` package
* [bioRxiv](https://biorxiv.org/) - via the `biorxivr` package
* [PMC/Pubmed via Entrez](https://www.ncbi.nlm.nih.gov/) - via the `rentrez` package
* arXiv - via the `aRxiv` package
* bioRxiv - via the `biorxivr` package
* PMC/Pubmed via Entrez - via the `rentrez` package
* Scopus - internal tooling
* Semantic Scholar (https://www.semanticscholar.org/) - internal tooling
* Semantic Scholar - internal tooling
* Many more are supported via the above sources (e.g., _Royal Society Open Science_ is
available via Pubmed)
* We __will__ add more, as publishers open up, and as we have time...See the [master list here](https://github.com/ropensci/fulltext/issues/4#issuecomment-52376743)
* We __will__ add more, as publishers open up, and as we have time...See the issues

Authentication: A number of publishers require authentication via API key, and some even more
draconian authentication processes involving checking IP addresses. We are working on supporting
all the various authentication things for different publishers, but of course all the OA content
is already easily available. See the **Authentication** section in `?fulltext-package` after
loading the package.

We'd love your feedback. Let us know what you think in the issue tracker (https://github.com/ropensci/fulltext/issues)

Article full text formats by publisher: https://docs.ropensci.org/fulltext/articles/formats
We'd love your feedback. Let us know what you think in the issue tracker


## Installation
Expand Down Expand Up @@ -104,9 +101,9 @@ quanteda::corpus(x)

## Contributors

* Scott Chamberlain <https://github.com/sckott>
* Will Pearse <https://github.com/willpearse>
* Katrin Leinweber <https://github.com/katrinleinweber>
* Scott Chamberlain
* Will Pearse
* Katrin Leinweber

## Meta

Expand All @@ -117,7 +114,5 @@ quanteda::corpus(x)

[![rofooter](https://ropensci.org/public_images/github_footer.png)](https://ropensci.org)

[suppdata]: https://github.com/ropensci/suppdata
[pubchunks]: https://github.com/ropensci/pubchunks
[docs]: https://docs.ropensci.org/fulltext/
[ftbook]: https://books.ropensci.org/fulltext/

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