Use Singularity 3.8.1, from https://github.com/singularityhub/github-… #170
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| on: | |
| push: | |
| pull_request: | |
| name: build_singularity | |
| jobs: | |
| build_singularity: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 30 | |
| strategy: | |
| matrix: | |
| singularity_version: | |
| - '3.8.1' | |
| container: | |
| image: quay.io/singularity/singularity:v${{ matrix.singularity_version }} | |
| options: --privileged | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Show singularity version | |
| run: singularity version | |
| - name: Build container | |
| run: ./scripts/build_singularity_container.sh | |
| - name: Test container, must detect BEAST2 | |
| run: singularity test beastier.sif | |
| - name: Show help of container | |
| run: singularity run-help beastier.sif | |
| - name: Run container | |
| run: ./scripts/run_container.sh | |