Use new CRAN package doc style #403
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: "0 0 2 * *" | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| install_beast2: [true, false] | |
| os: [ubuntu-latest] | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Install libcurl4-openssl-dev | |
| run: sudo apt install -qq libcurl4-openssl-dev | |
| - name: Fix rJava error # from https://travis-ci.community/t/cannot-connect-to-java-from-r/9754/8 | |
| run: sudo $(which R) CMD javareconf | |
| - name: Install fonts # from https://github.com/r-lib/systemfonts/issues/35#issuecomment-961900755 | |
| run: sudo apt install -qq libfontconfig1-dev | |
| - name: Install libharfbuzz-dev and libfribidi-dev | |
| run: sudo apt install -qq libharfbuzz-dev libfribidi-dev | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c("remotes", "rcmdcheck")) | |
| remotes::install_cran("shiny") | |
| remotes::install_cran("devtools") | |
| remotes::install_github("ropensci/beautier") | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("rcmdcheck") | |
| remotes::install_cran("covr") | |
| remotes::install_cran("lintr") | |
| remotes::install_github("MangoTheCat/goodpractice") | |
| shell: Rscript {0} | |
| - name: Install BEAST2 | |
| env: | |
| INSTALL_BEAST2: ${{ matrix.install_beast2 }} | |
| run: if [[ "$INSTALL_BEAST2" == true ]]; then ./scripts/install_beast2.sh ; fi | |
| - name: Check | |
| run: rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error") | |
| shell: Rscript {0} | |
| - name: Make sure that no files are created in the beautier .cache folder | |
| run: testthat::expect_equal(0, length(list.files(rappdirs::user_cache_dir(appname = "beautier")))) | |
| shell: Rscript {0} | |
| - name: Make sure that no files are created in the tracerer .cache folder | |
| run: testthat::expect_equal(0, length(list.files(rappdirs::user_cache_dir(appname = "tracerer")))) | |
| shell: Rscript {0} | |
| - name: Make sure that no files are created in the beastier .cache folder | |
| run: testthat::expect_equal(0, length(list.files(rappdirs::user_cache_dir(appname = "beastier")))) | |
| shell: Rscript {0} | |
| - name: Test coverage | |
| env: | |
| INSTALL_BEAST2: ${{ matrix.install_beast2 }} | |
| run: if [[ "$INSTALL_BEAST2" == true ]]; then Rscript -e 'covr::codecov()'; fi | |
| - name: Lint | |
| env: | |
| INSTALL_BEAST2: ${{ matrix.install_beast2 }} | |
| run: if [[ "$INSTALL_BEAST2" == false ]]; then Rscript -e 'lintr::lint_package()'; fi | |
| - name: Install beastier | |
| run: remotes::install_github("richelbilderbeek/beastier", ref = "develop") | |
| shell: Rscript {0} | |
| if: ${{ always() }} | |
| - name: Report | |
| run: beastier::beastier_report() | |
| shell: Rscript {0} | |
| if: ${{ always() }} | |