Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

file=R/are_beast2_input_lines.R,line=24,col=17,[object_usage_linter] no visible global function definition for 'get_default_beast2_path'

file=R/are_beast2_input_lines.R,line=30,col=17,[object_usage_linter] no visible global function definition for 'get_beastier_tempfilename'

file=R/are_beast2_input_lines.R,line=32,col=5,[object_usage_linter] no visible global function definition for 'save_lines'

file=R/are_beast2_input_lines.R,line=41,col=5,[object_usage_linter] no visible global function definition for 'check_true'

file=R/are_beast2_input_lines.R,line=68,col=17,[object_usage_linter] no visible global function definition for 'get_default_beast2_path'

file=R/are_beast2_input_lines.R,line=70,col=15,[object_usage_linter] no visible global function definition for 'create_temp_input_filename'

file=R/are_beast2_input_lines.R,line=72,col=3,[object_usage_linter] no visible global function definition for 'save_lines'

file=R/are_beast2_input_lines.R,line=73,col=15,[object_usage_linter] no visible global function definition for 'is_beast2_input_file'

file=R/are_beast2_input_lines.R,line=100,col=3,[object_usage_linter] no visible global function definition for 'has_unique_ids'