v2.4

NEW FEATURES

• None

MINOR IMPROVEMENTS

• None

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• install_beast2, upgrade_beast2, uninstall_beast2 are deprecated,
  as these violated CRAN policy. Thanks to Brian Ripley for sharing!
  The deprecation message will point users to the non-official
  beastierinstall package at https://github.com/richelbilderbeek/beastierinstall
• Removed deprecated function update_beastier

v2.3.1

beastier 2.3.1 (2021-05-15)

NEW FEATURES

• None

MINOR IMPROVEMENTS

• None

BUG FIXES

• Can correctly call BEAST2 when spaces in
  (1) BEAST2 bin filename,
  (2) BEAST2 jar filename,
  (3) BEAST2 input filename
  (4) BEAST2 state output filename.
  Thanks Jason Griffiths

DEPRECATED AND DEFUNCT

• None

v2.3

NEW FEATURES

• Add continue_beast2 to continue a BEAST2 run

MINOR IMPROVEMENTS

• Builds on GitHub Actions
• Added is_on_github_actions to detect the GitHub Actions environment
• is_on_ci detects the GitHub Actions environment

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• update_beastier: gives deprecation message

v2.2.1

NEW FEATURES

• None

MINOR IMPROVEMENTS

• get_default_beast2_jar_path allows for a custom folder name
• install_beast2 is silent by default
• install_beast2 and uninstall_beast2 give more information when
  verbose

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

v2.2

NEW FEATURES

• Add 'create_mcbette_beast2_options'

MINOR IMPROVEMENTS

• No testthat tests in code examples

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

v2.1.3

NEW FEATURES

• Add rename_beast2_options_filenames
• Add get_beast2_options_filenames
• Allow tildes in file paths, for example ~/beast2.xml
• Add beastier_report to help create a bug report
• Can install_beast2 for a specific version

MINOR IMPROVEMENTS

• Enable MacOS build again

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

v2.1.2

NEW FEATURES

• None

MINOR IMPROVEMENTS

• Documentation at rOpenSci to
  shows pictures

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

v2.1.1

NEW FEATURES

• Add vignettes

MINOR IMPROVEMENTS

• None

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

v2.1

NEW FEATURES

• Follows beautier v2.3 interface

MINOR IMPROVEMENTS

• None

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• The function arguments beast2_output_log_filename
  and beast2_output_trees_filename have become obsolete. Use
  create_tracelog()$filename and create_treelog()$filename as
  part of an MCMC instead
• The function argument beast2_working_dir is obsoleted, because it
  no longer served a purpose. Use setwd to set the working directory

v2.0.25

NEW FEATURES

• Add get_beast2_example_filenames to get the
  full paths of all the BEAST2 example files
• Add get_beast2_example_filename to get the
  full path of a BEAST2 example file
• Add get_default_beast2_working_dir to get the full path of
  the default BEAST2 working directory
• Add clear_beast2_working_dir to clear the BEAST2 working directory

MINOR IMPROVEMENTS

• None

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None