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Releases: ropensci/beastier

v2.0.24

30 Sep 07:14
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NEW FEATURES

  • None

MINOR IMPROVEMENTS

  • Do not check if beast2_path still/already exists in check_beast2_options

BUG FIXES

  • None

DEPRECATED AND DEFUNCT

  • None

v2.0.23

29 Sep 13:20
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beastier 2.0.23 (2019-09-29)

NEW FEATURES

  • Use BEAST2 main class name when calling the jar file,
    to fix the 'no main manifest attribute' error

MINOR IMPROVEMENTS

  • None

BUG FIXES

  • None

DEPRECATED AND DEFUNCT

  • None

v2.0.21

10 Sep 13:40
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NEW FEATURES

  • None

MINOR IMPROVEMENTS

  • create_beast2_options checks that the filenames are not in the same
    folder as the BEAST2 working directory

BUG FIXES

  • None

DEPRECATED AND DEFUNCT

  • None

v2.0.20

28 Aug 05:42
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NEW FEATURES

  • None

MINOR IMPROVEMENTS

  • Added get_beast2_options_filenames to obtain the filenames in a
    beast2_options

BUG FIXES

  • None

DEPRECATED AND DEFUNCT

  • None

v2.0.19

23 Aug 09:10
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NEW FEATURES

  • None

MINOR IMPROVEMENTS

  • check_beast2_options checks for duplicate filenames

BUG FIXES

  • None

DEPRECATED AND DEFUNCT

  • None

v2.0.18

14 Aug 07:08
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NEW FEATURES

  • Install BEAST2 v2.6.0, instead of v2.5.2

MINOR IMPROVEMENTS

  • Can create files in sub-sub-subfolders
  • Builds on Travis CI distribution 'Bionic'
  • Add are_identical_alignments
  • Add is_alignment

BUG FIXES

  • RNG seed is checked to be a whole number (Issue #35, thanks @thijsjanzen)

DEPRECATED AND DEFUNCT

  • None

v2.0.15

01 Jun 09:19
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  • Simplified run_beast2
  • Improved error checking and logging in run_beast2
  • Will overwrite files if requested (which is by default)
  • Removed example code that assumed all Linuxes have /home/username,
    thanks to Brian Ripley

v2.0.14

27 May 12:12
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  • Add SystemRequirements field to DESCRIPTION

v2.0.13

14 May 10:16
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NEW FEATURES

  • Install BEAST2 v2.5.2, instead of v2.5.1
  • Can call run_beast2/run_beast2_from_options in parallel

MINOR IMPROVEMENTS

  • None

BUG FIXES

  • None

DEPRECATED AND DEFUNCT

  • None

v2.0.12

08 Apr 17:15
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  • Package builds successfully without BEAST2 installed