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Removed test for ropensci/beastier#63
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richelbilderbeek committed May 9, 2022
1 parent 502f440 commit f0b94a2
Showing 1 changed file with 0 additions and 26 deletions.
26 changes: 0 additions & 26 deletions tests/testthat/test-create_beast2_input.R
Original file line number Diff line number Diff line change
Expand Up @@ -139,29 +139,3 @@ test_that("abuse: two alignments", {
"Must use one alignment, site model, clock model and tree prior"
)
})

test_that("Issue https://github.com/ropensci/beastier/issues/63", {
xml_text <- create_beast2_input(
beautier::get_fasta_filename(),
site_model = create_gtr_site_model(gamma_site_model = create_gamma_site_model()),
mcmc = create_mcmc(
chain_length = 9e+07,
store_every = -1,
pre_burnin = 0,
n_init_attempts = 10,
sample_from_prior = FALSE,
tracelog = create_tracelog(filename = "Step 4.2 COI BEAST output.log", log_every = 9000),
screenlog = create_screenlog(log_every = 9000),
treelog = create_treelog(filename = "Step 4.2 COI BEAST output.trees",log_every = 9000)),
beauti_options = create_beauti_options_v2_6()
)
expect_equal(
1,
length(
stringr::str_subset(
xml_text,
"logger id=.treelog.t:test_output_.*fileName=\"Step.*"
)
)
)
})

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