v2.5

NEW FEATURES

• None

MINOR IMPROVEMENTS

• Use GitHub Actions to check build
• Check more setups, thanks @GaryNapier
• Better synergy with system2

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• phylo_to_xml_state removed
• site_models_to_xml_state gives a deprecation message
• tree_priors_to_xml_state gives a deprecation message
• mrca_priors_to_xml_state has the arguments mrca_prior
  and has_non_strict_clock_model replaced by inference_model

v2.4.1

• Update build

v2.4

NEW FEATURES

• Add inference_models vignette

MINOR IMPROVEMENTS

• Added create_ns_inference_model
• No testthat tests in examples

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

v2.3.7

NEW FEATURES

• None

MINOR IMPROVEMENTS

• Internal functions have better names
• More internal functions use an inference_model (instead of
  multiple elements of it)

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

v2.3.6

NEW FEATURES

• None

MINOR IMPROVEMENTS

• None

BUG FIXES

• Fix bug when using tipdating, thanks Katherine S. Walter, @ksw9

DEPRECATED AND DEFUNCT

• None

v2.3.5

NEW FEATURES

• Add get_mcmc_filenames and get_inference_model_filenames
• Add rename_mcmc_filenames and rename_inference_model_filenames
• Add rename functions get_remove_dir_fun, get_remove_hex_fun and get_replace_dir_fun

MINOR IMPROVEMENTS

• Link to https of BEAST2

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

v2.3.4

NEW FEATURES

• None

MINOR IMPROVEMENTS

• Lost dependency on orphaned geiger package

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• Moved fasta_to_phylo and fastas_to_phylos to repository at
  https://github.com/richelbilderbeek/ribir to lose dependency on
  orphaned geiger package

v2.3.3

NEW FEATURES

• None

MINOR IMPROVEMENTS

• Implemented all @lintr-bot's suggestions

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

v2.3.2

NEW FEATURES

• None

MINOR IMPROVEMENTS

• None

BUG FIXES

• Remove files for CRAN submission

DEPRECATED AND DEFUNCT

• None

v2.3.1

NEW FEATURES

• None

MINOR IMPROVEMENTS

• Use testthat in documentation, instead of the less known testit

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None