Releases · ropensci/beautier

12 Dec 14:07

v1.11

Minor bugfixes
Improved function names, to better reflect their purpose
Improved readability of functions, usually by shortening these
Added more examples to documentation
Check resulting XMLs for equivalence (instead of equality), to help improve readability and development speed
Minor interface changes, mostly shortened argument names
Functions that do not directly help using create_beast2_input are not exported anymore

Assets 2

23 Nov 11:27

v1.10

Allows for a fixed crown age
Supports all 4 site models: GTR, HKY, JC69, TN93
Supports 2 clock models: relaxed log-normal and strict
Supports 5 tree priors: Birth-Death, Coalescent Bayesian Skyline, Coalescent Constant Population, Coalescent Exponential Population, Yule
Supports all 10 distributions: beta, exponential, gamma, inverse gamma, Laplace, log-normal, normal, 1/x, Poisson, uniform
Supports all 10 different distributions's parameters (alpha, beta, clock rate, lambda, M, mean, mu, S, scale, sigma)
Can use multiple alignments
Can use different prior distribution for the 5 tree priors
Thoroughly tested for single (possibly concatenated) alignment

Assets 2

09 Nov 08:01

v1.9

Allows for a fixed crown age
Supports all 4 site models: GTR, HKY, JC69, TN93
Supports 2 clock models: relaxed log-normal and strict
Supports 5 tree priors: Birth-Death, Coalescent Bayesian Skyline, Coalescent Constant Population, Coalescent Exponential Population, Yule
Can use multiple alignments
Can use different prior distribution for the 5 tree priors

Assets 2

08 Nov 07:49

v1.8

Allows for a fixed crown age
Supports all 4 site models: GTR, HKY, JC69, TN93
Supports 2 clock models: relaxed log-normal and strict
Supports 5 tree priors: Birth-Death, Coalescent Bayesian Skyline, Coalescent Constant Population, Coalescent Exponential Population, Yule
Can use multiple alignments
Can use different prior distribution for: Yule model's birth-rate

Assets 2