A bit of cleanup for 0.1.8 #280
Workflow file for this run
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| on: | |
| push: | |
| branches: main | |
| pull_request: | |
| name: check-linux-testthat-2e-3e | |
| jobs: | |
| check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}, testthat ${{ matrix.config.testhat_e }}e) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { os: ubuntu-22.04, r: 'release', testhat_e: '2' } | |
| - { os: ubuntu-22.04, r: 'release', testhat_e: '3' } | |
| env: | |
| CRAN: ${{ matrix.config.cran }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| DBROOTPASS: r2N5y7V* | |
| DITTODB_ENABLE_PG_TESTS: true | |
| DITTODB_ENABLE_MARIA_TESTS: true | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| _R_CHECK_CRAN_INCOMING_: false | |
| RSPM: "https://packagemanager.rstudio.com/all/__linux__/focal/latest" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Cache R packages | |
| uses: actions/cache@v3 | |
| id: rlibcache | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{ hashFiles('DESCRIPTION') }}-testthat-editions | |
| - name: Install dependencies (linux) | |
| run: | | |
| sudo apt install unixodbc unixodbc-dev --install-suggests | |
| sudo apt install libcurl4-openssl-dev libmariadb-dev postgresql-client libpq-dev odbc-postgresql | |
| if: contains(runner.os, 'linux') | |
| - name: Install databases and odbc manual adjustments (linux) | |
| run: | | |
| bash db-setup/postgres-docker-container-only.sh | |
| sudo service mysql stop | |
| bash db-setup/mariadb-docker-container-only.sh | |
| # the driver as installed in odbcinst.ini isn't located | |
| sudo sed -i 's/Driver=psqlodbcw.so/Driver=\/usr\/lib\/x86_64-linux-gnu\/odbc\/psqlodbcw.so/g' /etc/odbcinst.ini | |
| sudo sed -i 's/Driver=psqlodbca.so/Driver=\/usr\/lib\/x86_64-linux-gnu\/odbc\/psqlodbca.so/g' /etc/odbcinst.ini | |
| # mysql needs time to boot, try it every 5 seconds for 1 minute | |
| n=0 | |
| until [ $n -ge 12 ] | |
| do | |
| mysql -h 127.0.0.1 -u root -p${{ env.DBROOTPASS }} -e "SHOW DATABASES" && break | |
| sleep 5 | |
| n=$[$n+1] | |
| done | |
| if: contains(runner.os, 'linux') | |
| - name: Install R dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: rcmdcheck, httptest | |
| - name: Set the testthat edition | |
| run: | | |
| Rscript -e "desc::desc_set('Config/testthat/edition' = '${{ matrix.config.testhat_e }}', file = 'DESCRIPTION')" | |
| - name: Setup databases | |
| run: bash db-setup/populate-dbs.sh | |
| env: | |
| PGPASSWORD: ${{ env.DBROOTPASS }} | |
| MYSQL_PWD: ${{ env.DBROOTPASS }} | |
| - name: Check | |
| shell: Rscript {0} | |
| run: rcmdcheck::rcmdcheck(args = c('--no-manual', '--as-cran'), error_on = 'note', check_dir = 'check') | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |