build: Update rust-htslib to 0.46.0 and GSL to 7.0.0 for Linux ARM64 compatibility

[martin-g]

Related to: 0ffaf4d#commitcomment-140597552

[fxwiegand]

test_vcf_annotate_dgidb seems to fail in testing.

rust-bio-tools/tests/lib.rs

Lines 356 to 363 in 37e3dbe

	#[test]
	fn test_vcf_annotate_dgidb() {
	let exec_test = Command::new("bash")
	.arg("-c")
	.arg("target/debug/rbt vcf-annotate-dgidb tests/annotate_dgidb_test.vcf | bcftools view - | wc -l").output()
	.expect("failed to execute process");
	assert!(exec_test.status.success());
	assert_eq!(String::from_utf8(exec_test.stdout).unwrap().trim(), "65");

[martin-g]

I'll take a look soon !

[martin-g]

I think I fixed the problem!
http://dgidb.org/api/v2/interactions.json returns 404. Now only HTTPS is supported.
But this means that also the old versions of rbt should be broken.

[fxwiegand]

I think I fixed the problem! http://dgidb.org/api/v2/interactions.json returns 404. Now only HTTPS is supported. But this means that also the old versions of rbt should be broken.

Thanks for digging into this! Yes indeed it seems weird that the test didn't fail in earlier releases.

[martin-g]

Very welcome!
I'd like to ask again for a new release please ! :-)

[fxwiegand]

Very welcome! I'd like to ask again for a new release please ! :-)

Yep I'll try to make it happen asap. I don't have admin rights so I cannot git commit --allow-empty -m "chore: release 0.42.2" -m "Release-As: 0.42.2" on the main branch to force release-please to Create a new PR.

[martin-g]

Friendly ping!

[fxwiegand]

Friendly ping!

On it thx!

Edit: And the release is out!

[martin-g]

Thank you, @fxwiegand !