Scripts and notebooks used to solve exercises from rosalind.info
This is a collection of scripts I have written to solve the bioinformatics exercises at rosalind.info. They are written in Python, using Jupyter notebooks to mix my personal notes and comments with code.
I anticipate this will mostly be a record for myself, but feel free to copy any part that is of use! This project is licenced under the BSD-2-clause licence.
Update: 2020-11-23
From here on, I would like to try a different workflow.
Instead of developing the scripts as Jupyter notebook, I am going to use
VSCodium to write the code as separate scripts/applications.
These scripts will then use the Black code
format, and functions will be tested using pytest, which can also be
implemented as automated test on GitHub (with Actions).
Later on, I might add documentation (of the functions) using
Sphinx and
readthedocs.
And - but that might as well be in a separate repository -
put all useful functions together in one or a few scripts
as my own sort of bioinformatics toolbox.