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upload notebooks for generation of figures (cell system submission)
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manuscript/Figure2/random_partition_average_testhat_929.csv
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manuscript/Figure2/seed_871/6_best.W.loss.0.03349903155118227.csv
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manuscript/Figure2/seed_871/6_best.alpha.loss.0.03349903155118227.csv
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,100 @@ | ||
| 0,0 | ||
| 4EBP1pS65,0.82575834 | ||
| RbpS807,0.9392874 | ||
| MAPKpT202,1.3849095 | ||
| MEKpS217,0.9552714 | ||
| S6,1.9080071 | ||
| PAI-1,1.1694803 | ||
| AKTpS473,0.92589575 | ||
| AMPKpT172,1.8811371 | ||
| b-Catenin,1.1051855 | ||
| BIM,1.9447 | ||
| Caveolin,1.5822434 | ||
| CyclinB1,1.4775206 | ||
| CyclinD1,1.8420327 | ||
| GSK3abpS21,1.432176 | ||
| GSKpS9,0.9069437 | ||
| IGFBP2,1.6493031 | ||
| p38pT180,2.340389 | ||
| p53,1.7530639 | ||
| p70S6KpT389,0.7392924 | ||
| SRCpY527,0.9990577 | ||
| STAT3pY705,1.7843411 | ||
| TSC2pT1462,2.0964353 | ||
| YAPpS127,1.178731 | ||
| ACC1,1.1228584 | ||
| AKTpT308,0.97663724 | ||
| AKT,1.8499388 | ||
| b-CateninpS,2.0935442 | ||
| Fibronectin,1.3061672 | ||
| HSP27,1.8690017 | ||
| IGF1R-beta,1.6336954 | ||
| IRS1,1.3868499 | ||
| p27,1.7435615 | ||
| c-Myc,1.924026 | ||
| SMAD3,1.5748217 | ||
| STAT3,1.6264845 | ||
| STAT5,1.2657682 | ||
| STAT5pY694,1.0858345 | ||
| COX2,2.3349116 | ||
| PAX2,1.7199814 | ||
| PLK1,0.9805025 | ||
| YBIpS102,1.2193671 | ||
| CHK2pT68,1.9261156 | ||
| S6pS235,0.3218574 | ||
| S6pS240,0.15837093 | ||
| 4EBP1pT37,0.7370829 | ||
| Caspase9,1.3313165 | ||
| a-tubulin,1.4256104 | ||
| ATMpS1981,1.9064837 | ||
| ATR,1.4916134 | ||
| BAK,1.1038146 | ||
| BCL-XL,1.7150171 | ||
| BCL2,1.0609411 | ||
| bRAF,1.8571873 | ||
| c-JUNpS73,1.7415105 | ||
| Casp9cAsp31,1.1194322 | ||
| CHK1pS345,2.1048822 | ||
| cRAFV,1.2105726 | ||
| EGFRV,1.1576775 | ||
| ELK1pS383,0.9921068 | ||
| ERa,1.8754232 | ||
| GATA3,0.96437746 | ||
| GSK3ab,2.4790637 | ||
| mTORpS2448,1.7357824 | ||
| p21,0.90799284 | ||
| STAT6pY641,1.6748716 | ||
| TAZpS89,1.661376 | ||
| XRCC1,1.1455493 | ||
| PCNA,1.6680808 | ||
| PDK1pS241,1.6753794 | ||
| PI3Kp85,2.299178 | ||
| PKCa,1.8856763 | ||
| RAD51,1.7001755 | ||
| SRCpY416,1.466478 | ||
| 4EBP1pT70,1.2663357 | ||
| ACCpS79,1.7893596 | ||
| Collagenase,1.8733795 | ||
| CyclinE1,1.2809345 | ||
| IRS1pS307,1.4951714 | ||
| p38,1.2794389 | ||
| SMAD3pS423,1.8501269 | ||
| TSC2,1.683496 | ||
| SRC,1.0279399 | ||
| G2M,2.738608 | ||
| G1arrest,0.9152883 | ||
| G2arrest,2.159692 | ||
| Sarrest,1.5376464 | ||
| cellviab,0.95978564 | ||
| aMEK,1.0505557 | ||
| aAKT,1.0100747 | ||
| aHDAC,1.9226482 | ||
| aMDM2,1.0680306 | ||
| aJAK,0.9714392 | ||
| aBRAFm,1.1602432 | ||
| aPKC,1.9023606 | ||
| aSTAT3,2.0717995 | ||
| amTOR,1.0770721 | ||
| aPI3K,1.2054353 | ||
| aCDK4,1.407575 | ||
| aSRC,0.83707607 |
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manuscript/Figure2/seed_871/6_best.eps.loss.0.03349903155118227.csv
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,100 @@ | ||
| 0,0 | ||
| 4EBP1pS65,1.7278428 | ||
| RbpS807,1.7737277 | ||
| MAPKpT202,1.7558315 | ||
| MEKpS217,1.7453363 | ||
| S6,0.9659667 | ||
| PAI-1,1.3952813 | ||
| AKTpS473,3.9829671 | ||
| AMPKpT172,0.9172592 | ||
| b-Catenin,1.5475028 | ||
| BIM,1.0634202 | ||
| Caveolin,1.5414795 | ||
| CyclinB1,1.8898276 | ||
| CyclinD1,0.90811723 | ||
| GSK3abpS21,1.3322612 | ||
| GSKpS9,1.6831009 | ||
| IGFBP2,1.0131292 | ||
| p38pT180,1.4310831 | ||
| p53,0.99256706 | ||
| p70S6KpT389,1.5622652 | ||
| SRCpY527,1.3472575 | ||
| STAT3pY705,1.0526443 | ||
| TSC2pT1462,1.1444827 | ||
| YAPpS127,1.7512753 | ||
| ACC1,0.7292948 | ||
| AKTpT308,1.6194487 | ||
| AKT,1.0217471 | ||
| b-CateninpS,1.8356776 | ||
| Fibronectin,0.6388385 | ||
| HSP27,0.9831484 | ||
| IGF1R-beta,1.0040977 | ||
| IRS1,1.3083299 | ||
| p27,0.8766556 | ||
| c-Myc,0.8210167 | ||
| SMAD3,1.5882854 | ||
| STAT3,1.1229757 | ||
| STAT5,1.1585097 | ||
| STAT5pY694,1.3565614 | ||
| COX2,1.5161248 | ||
| PAX2,0.8301391 | ||
| PLK1,0.8598456 | ||
| YBIpS102,1.6852694 | ||
| CHK2pT68,1.8279308 | ||
| S6pS235,2.2111104 | ||
| S6pS240,0.92236793 | ||
| 4EBP1pT37,1.6167269 | ||
| Caspase9,1.9371645 | ||
| a-tubulin,1.46576 | ||
| ATMpS1981,0.8139112 | ||
| ATR,1.3037703 | ||
| BAK,1.5000904 | ||
| BCL-XL,0.83980405 | ||
| BCL2,0.61545414 | ||
| bRAF,0.96715224 | ||
| c-JUNpS73,0.914814 | ||
| Casp9cAsp31,1.5995244 | ||
| CHK1pS345,0.5468789 | ||
| cRAFV,1.4243902 | ||
| EGFRV,1.4466981 | ||
| ELK1pS383,1.5614507 | ||
| ERa,0.7636838 | ||
| GATA3,0.94950855 | ||
| GSK3ab,1.4916048 | ||
| mTORpS2448,0.9430395 | ||
| p21,1.5408993 | ||
| STAT6pY641,1.0012652 | ||
| TAZpS89,0.99384594 | ||
| XRCC1,1.7261107 | ||
| PCNA,1.0538836 | ||
| PDK1pS241,0.86276025 | ||
| PI3Kp85,1.5482349 | ||
| PKCa,0.84163034 | ||
| RAD51,0.9704704 | ||
| SRCpY416,1.0067635 | ||
| 4EBP1pT70,1.6365488 | ||
| ACCpS79,0.6801541 | ||
| Collagenase,0.8408144 | ||
| CyclinE1,1.4804119 | ||
| IRS1pS307,1.559334 | ||
| p38,1.4075851 | ||
| SMAD3pS423,0.9050298 | ||
| TSC2,0.99600387 | ||
| SRC,1.5076602 | ||
| G2M,0.29358062 | ||
| G1arrest,2.1865318 | ||
| G2arrest,0.7816996 | ||
| Sarrest,2.4178727 | ||
| cellviab,3.0502343 | ||
| aMEK,1.4173297 | ||
| aAKT,1.28426 | ||
| aHDAC,1.7278454 | ||
| aMDM2,1.1371169 | ||
| aJAK,1.0385336 | ||
| aBRAFm,1.0094314 | ||
| aPKC,3.1073089 | ||
| aSTAT3,1.7656472 | ||
| amTOR,1.4972287 | ||
| aPI3K,1.4065152 | ||
| aCDK4,1.0998522 | ||
| aSRC,1.1146412 |
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