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Hi! I'm new to Seurat/computational bio in general so bear with me! But I've been trying to analyze a spatial dataset/plot the clusters onto the tissue images but for some reason it's not plotting. I run into the same issue when using any of the Seurat related plotting functions; any suggestion on what may be going wrong? Let me know if I can provide any additional info that may be helpful. Thanks in advance for your help :))
Hi! I'm new to Seurat/computational bio in general so bear with me! But I've been trying to analyze a spatial dataset/plot the clusters onto the tissue images but for some reason it's not plotting. I run into the same issue when using any of the Seurat related plotting functions; any suggestion on what may be going wrong? Let me know if I can provide any additional info that may be helpful. Thanks in advance for your help :))
tissue_plot <- SpatialDimPlot(data, cells.highlight = CellsByIdentities(object = data, idents = c(0, 1, 3, 6, 8)), facet.highlight = TRUE, ncol = 3)
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