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Plotting Clusters on Tissue #9662

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kuaaaaaa opened this issue Feb 3, 2025 · 0 comments
Open

Plotting Clusters on Tissue #9662

kuaaaaaa opened this issue Feb 3, 2025 · 0 comments

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@kuaaaaaa
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kuaaaaaa commented Feb 3, 2025

Hi! I'm new to Seurat/computational bio in general so bear with me! But I've been trying to analyze a spatial dataset/plot the clusters onto the tissue images but for some reason it's not plotting. I run into the same issue when using any of the Seurat related plotting functions; any suggestion on what may be going wrong? Let me know if I can provide any additional info that may be helpful. Thanks in advance for your help :))

tissue_plot <- SpatialDimPlot(data, cells.highlight = CellsByIdentities(object = data, idents = c(0, 1, 3, 6, 8)), facet.highlight = TRUE, ncol = 3)

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