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408 Open 7,738 Closed
408 Open 7,738 Closed
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Issues list

Integration single-cell data with spatial transcriptomic from 10x Visium
#9703 opened Feb 21, 2025 by TiphaineCMartin
SCTransform generates memory error with a large dataset
#9702 opened Feb 21, 2025 by TiphaineCMartin
Unable to reproduce results from seurat vignette bug Something isn't working
#9699 opened Feb 20, 2025 by rominaappierdo
P-values of NaN or NA from FindMarkers() will crash the FindConservedMarkers() function
#9694 opened Feb 19, 2025 by wong-ziyi
Integrate multiple sample
#9693 opened Feb 19, 2025 by wfgui
1
Documentation: <insert-descriptive-title>:vignettes>description mistake documentation Error in documentation
#9692 opened Feb 19, 2025 by XanUniv
SketchData: Error in Calculating Leverage Score, fails with "NA/NaN/Inf in qr() function" error
#9690 opened Feb 18, 2025 by nicholaslimwy
Feature Request: Please update VlnPlot for better raster points enhancement New feature or request
#9681 opened Feb 13, 2025 by david-priest
2
erro in test dataset in LoadAkoya
#9680 opened Feb 12, 2025 by giulialopatriello95
Issue: ScaleData Not Working with BPCells
#9676 opened Feb 10, 2025 by EliseCoopman
9
BUG: cannot open URL - Issues with "satijalab/azimuth", Seurat additional package installation bug Something isn't working
#9675 opened Feb 10, 2025 by jb018
Different results by running clustering steps (FindNeighbors+FindClusters+RunUMAP) before/after Harmony
#9673 opened Feb 7, 2025 by Mar10L
SpatialDimPlot() with interactive = T doesn't work for slideseq due to ScaleFactors error bug Something isn't working
#9670 opened Feb 5, 2025 by kelsey-b1
1
FeaturePlot scale changes when put 3 cols bug Something isn't working
#9669 opened Feb 5, 2025 by vayac
1
Colour gradient legend for integrated dot plot
#9668 opened Feb 5, 2025 by laurenjade88
Error in updating Seurat packages
#9667 opened Feb 5, 2025 by hnglong2610
1
Default branch change affecting remotes::install_github
#9664 opened Feb 3, 2025 by dcollins15
Subclustering of SCTransformed Integrated dataset
#9663 opened Feb 3, 2025 by Pieros123-R
Plotting Clusters on Tissue
#9662 opened Feb 3, 2025 by kuaaaaaa
FindAllmarkers => Doheatmap => Heterogeneous clusters
#9661 opened Jan 31, 2025 by karabicicim
SCT data or scale.data to select top highly expressed genes in scRNAseq to compare with VST-transformed values in bulkRNAseq?
#9660 opened Jan 31, 2025 by denvercal1234GitHub
Error when projecting reference dataset with on-disc data matrix: "Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 't': Argument 'x' must be of type logical, integer or numeric, not 'list'" bug Something isn't working
#9659 opened Jan 31, 2025 by sbamopoulos
Add raster.dpias parameter for VlnPlot enhancement New feature or request
#9656 opened Jan 29, 2025 by lucygarner
2
Single cell- feature plots and dot plots
#9655 opened Jan 29, 2025 by isaiao01
Normalisation / SCTransform for SVG spatial analysis
#9654 opened Jan 29, 2025 by cathalgking
ProTip! Adding no:label will show everything without a label.