sevenbridges 1.5.5

Improvements

API Client (Authentication)

• Support three authentication methods: direct authentication, via environment variables, or via user configuration file. Compliant with the new API client authentication specification. Please check the latest vignette vignette("api", package = "sevenbridges") for the current authentication methods.
• Updated platform types: now users can choose from "cgc", "aws-us", "aws-eu", "gcp", and "cavatica" in Auth() to avoid using API base URLs explicitly.
• Removed credential information parsing when package is loaded.

API Client (Task and Upload)

• File ID support on task input (directly) (#27)
• New argument keep_test for task_add() added: when users push a Tool object with no sbg:job information, can still use keep_test = TRUE to keep previous test information. (#31)
• Support manifest file upload with fitler and subsetting for uploader (#46)

Docker Image

• Migrated Docker images to Seven Bridges Docker Hub account (#43), now users could use docker pull sevenbridges/sevenbridges-r

CWL Support

• Improved robustness of convert_app() when a CWL JSON has more fields than defined (#44)

Miscellaneous

• New vignette style (#38)