Add gnu make for Femto

mk/Make.defs.femto

@@ -0,0 +1,95 @@
+################################################################################
+# Parallel SCHISM Makefile
+#
+# User makes environment settings for particular OS / PLATFORM / COMPILER / MPI
+# below as well as setting flags having to do with included algorithms (e.g. sediment)
+# and the compiler configuration (debug, timing). 
+#
+# The environment settings are based on the following options.
+#
+# Compiler name:
+#   FCS: Serial compiler (for utilities)
+#   FCP: Parallel compiler
+#   FLD: Linker (in general same as parallel compiler)
+#
+# Compilation flags
+#   FCSFLAGS: Flags for serial compilation
+#   FCPFLAGS: Flags for parallel compilation (including all pre-processing flags)
+#   FLDFLAGS: Flags for linker (e.g., -O2)
+#
+# Preprocessor flags:
+#   DEBUG: Enable debugging code
+#   ORDERED_SUM: Enable globally ordered sums & dot-products for bit reproducibility
+#     of state quantities independent of number of processors (note: this can
+#     significantly degrade performance);
+#   INCLUDE_TIMING: Enable wallclock timing of code (note: this can have slight
+#     effect on performance);
+#   MPI_VERSION = 1 or 2: Version of MPI (try 2 first, if compile fails due to mpi
+#     related errors then switch to version 1;
+#
+# Libraries (needed for parallel code)
+#   MTSLIBS: Flags for linking ParMeTiS/MeTiS libaries
+################################################################################
+
+################################################################################
+## Sciclone/Femto
+################################################################################
+ENV = FEMTO
+
+################################################################################
+# Alternate executable name if you do not want the default. 
+################################################################################
+EXEC   := pschism_$(ENV)_Intel
+
+################################################################################
+# Environment 
+################################################################################
+
+FCP = mpif90
+FCS = ifort
+FLD = $(FCP)
+# MPI vserion (1 or 2) 
+PPFLAGS := $(PPFLAGS) -DMPIVERSION=2 
+
+#-CB is much slower to compile and run
+#Pure MPI
+FCPFLAGS = $(PPFLAGS) -O3 -xCORE-AVX2 -mcmodel=medium -fma -align array64byte -finline-functions
+FLDFLAGS = -O3 -xCORE-AVX2 -mcmodel=medium -fma -align array64byte -finline-functions
+
+#Hybrid 
+#FCPFLAGS = $(PPFLAGS) -O2 -mcmodel=medium -assume byterecl -ipo -axCORE-AVX2 -xSSE4.2 -qopenmp
+#FLDFLAGS = -O2 -mcmodel=medium -ipo -axCORE-AVX2 -xSSE4.2 -qopenmp
+#EXEC := $(EXEC)_OMP
+
+#####Libraries
+#MTSLIBS = -L./ParMetis-3.1-Sep2010/ -lparmetis -lmetis
+CDFLIBS = -L$(NETCDF_FORTRAN)/lib -L$(NETCDF)/lib -lnetcdf -lnetcdff
+CDFMOD = -I$(NETCDF)/include -I$(NETCDF_FORTRAN)/include # modules for netcdf
+
+
+################################################################################
+# Algorithm preference flags.
+# Comment out unwanted modules and flags.
+################################################################################
+
+# -DSCHISM is always on and is defined elsewhere
+
+include ../mk/include_modules
+
+# Don't comment out the follow ifdef
+ifdef USE_GOTM
+   GTMMOD =  -I/sciclone/home10/yinglong/SCHISM/svn/trunk/src/GOTM3.2.5/modules/IFORT/ #modules
+   GTMLIBS = -L/sciclone/home10/yinglong/SCHISM/svn/trunk/src/GOTM3.2.5/lib/IFORT/ -lturbulence_prod  -lutil_prod
+else
+   GTMMOD =
+   GTMLIBS =
+endif
+
+
+######### Specialty compiler flags and workarounds
+# Add -DNO_TR_15581 like below for allocatable array problem in sflux_subs.F90
+# PPFLAGS := $(PPFLAGS) -DNO_TR_15581
+
+# Obsolete flags: use USE_WRAP flag to avoid problems in ParMetis lib (calling C from FORTRAN)
+# PPFLAGS := $(PPFLAGS) -DUSE_WRAP 
+

src/Makefile

@@ -347,7 +347,6 @@ CONFIG_OBJS :=  $(addprefix o/$(config)/, $(OBJS))
 # Names of source files with relative path as found on $VPATH
 FULLSRC := $(foreach f,$(subst .o,.F90,$(OBJS)),$(firstword $(wildcard $(VPATH:%=%$f) not-found:$f)))
 
-#PARMETISDIR := ./ParMetis-3.1-Sep2010
 PARMETISDIR := ./ParMetis-4.0.3
 ifeq ($(ENV),EDISON)
     PARMETISDIR := $(PARMETISDIR).cray