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Implement alternative uncertainty propagation methods for full model uncertainty #535

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2f7d203
first implement of jacobi propagate method of model uncertinty comput…
MoAly98 Apr 4, 2025
16606ff
wrap the per_channel and per_bin slicing into functions
MoAly98 Apr 7, 2025
6e56e64
add bootstrap method and clear up a bit before modularising
MoAly98 Apr 7, 2025
1def937
fix model_utils test
MoAly98 Apr 7, 2025
02eab2c
pass covariances directly to yield_stdev instead of minuit object, an…
MoAly98 Apr 9, 2025
09c2ac6
update error message when wrong unc method used
MoAly98 Apr 9, 2025
67b6bd8
predictions test
MoAly98 Apr 9, 2025
6a8af67
predictions test
MoAly98 Apr 10, 2025
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2 changes: 1 addition & 1 deletion .pre-commit-config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ repos:
- id: mypy
name: mypy with Python 3.12
files: src/cabinetry
additional_dependencies: ["numpy>=1.22", "boost-histogram>=1.0.1", "click>=8", "types-tabulate", "types-PyYAML", "hist>=2.3.0"]
additional_dependencies: ["numpy>=1.22", "boost-histogram>=1.0.1", "click>=8", "types-tabulate", "types-PyYAML", "hist>=2.3.0","jacobi"]
args: ["--python-version=3.12"]
- repo: https://github.com/pycqa/flake8
rev: 7.1.2
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1 change: 1 addition & 0 deletions pyproject.toml
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Expand Up @@ -37,6 +37,7 @@ classifiers = [
]
dependencies = [
"pyhf[minuit]~=0.7.0", # model.config.suggested_fixed / .par_names API changes, set_poi(None)
"jacobi",
"boost_histogram>=1.0.0", # subclassing with family, 1.02 for stdev scaling fix (currently not needed)
"hist>=2.5.0", # hist.intervals.poisson_interval
"tabulate>=0.8.1", # multiline text
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