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@sct-pipeline

sct-pipeline

This site gathers various pipelines compatible with the Spinal Cord Toolbox (SCT) for processing MRI data.

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  1. gm-challenge gm-challenge Public

    Spinal cord gray matter imaging challenge

    Python 8 3

  2. bavaria-quebec bavaria-quebec Public

    Bavaria (TUM) and Quebec (Polytechnique) collaboration on a project on spinal cord MS lesion segmentation.

    Shell 6 1

  3. contrast-agnostic-softseg-spinalcord contrast-agnostic-softseg-spinalcord Public

    Contrast-agnostic spinal cord segmentation project with softseg

    Python 4 3

  4. fmri-segmentation fmri-segmentation Public

    Repository for the project on automatic spinal cord segmentation based on fMRI EPI data

    Python 4 1

  5. ukbiobank-spinalcord-csa ukbiobank-spinalcord-csa Public

    Measure of the averaged cross-sectional area (cord CSA) between C2 and C3 of the spinal cord with UK Biobank Brain MRI dataset.

    Python 3 1

  6. gm-challenge-data gm-challenge-data Public

    Dataset for the gray matter acquisition challenge

    3 1

Repositories

Showing 10 of 42 repositories
  • critical-ms-lesion Public

    Detection of critical MS lesion in the spinal cord

    sct-pipeline/critical-ms-lesion’s past year of commit activity
    0 LGPL-2.1 0 3 1 Updated Nov 13, 2024
  • contrast-agnostic-softseg-spinalcord Public

    Contrast-agnostic spinal cord segmentation project with softseg

    sct-pipeline/contrast-agnostic-softseg-spinalcord’s past year of commit activity
    Python 4 MIT 3 28 1 Updated Nov 13, 2024
  • csa-atrophy Public

    Evaluate the sensitivity of atrophy detection with SCT

    sct-pipeline/csa-atrophy’s past year of commit activity
    Python 1 MIT 0 15 3 Updated Nov 5, 2024
  • rootlets-informed-reg2template Public

    Spinal rootlets-informed registration to the template

    sct-pipeline/rootlets-informed-reg2template’s past year of commit activity
    1 MIT 0 3 0 Updated Nov 4, 2024
  • fmri-segmentation Public

    Repository for the project on automatic spinal cord segmentation based on fMRI EPI data

    sct-pipeline/fmri-segmentation’s past year of commit activity
    Python 4 MIT 1 26 (1 issue needs help) 0 Updated Oct 2, 2024
  • balgrist-sci Public

    Pipeline for processing SCI patients using SCT

    sct-pipeline/balgrist-sci’s past year of commit activity
    Python 2 MIT 0 2 0 Updated Sep 18, 2024
  • dcm-oklahoma Public

    Analysis of DCM structural MRI and qMRI of the spinal cord

    sct-pipeline/dcm-oklahoma’s past year of commit activity
    1 MIT 0 0 0 Updated Jul 31, 2024
  • STOP-MS-data Public

    Compute CSA on upper spinal cord on MPRAGE from large MS cohort from Karolinska Institute.

    sct-pipeline/STOP-MS-data’s past year of commit activity
    Shell 0 MIT 0 3 0 Updated Jul 26, 2024
  • spine-park Public

    Pipeline for multicontrast analysis in PD patients

    sct-pipeline/spine-park’s past year of commit activity
    Shell 0 MIT 0 8 0 Updated Jul 9, 2024
  • mri-linac-longitudinal-registration Public

    This project investigates the stability of spinal cord positioning across MRI-LINAC sessions

    sct-pipeline/mri-linac-longitudinal-registration’s past year of commit activity
    0 MIT 0 1 0 Updated Jun 29, 2024
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