v0.2.5

[0.2.5] - 2024-11-06

Fixed

• Incompatibility issues due to newest release of multiscale-spatial-image #760

v0.2.4

[0.2.4] - 2024-11-06

Major

• Enable vectorization of bounding_box_query for all SpatialData elements. #699

Minor

• Added shortest_path parameter to get_transformation_between_coordinate_systems #714
• Added get_pyramid_levels() utils API #719
• Improved ergonomics of concatenate() when element names are non-unique #720
• Improved performance of writing images with multiscales #577

v0.2.3

[0.2.3] - 2024-09-25

Minor

• Added clip: bool = False parameter to polygon_query() #670
• Add sort parameter to PointsModel.parse() #672

Fixed

• Fix interpolation artifact multiscale computation for labels #697

v0.2.2

[0.2.2] - 2024-08-07

Major

• New disk format for shapes using GeoParquet (the change is backward compatible) #542

Minor

• Add return_background as argument to get_centroids and get_element_instances #621
• Ability to save data using older disk formats #542

Fixed

• Circles validation now checks for inf or nan radii #653
• Bug with table name in torch dataset #654 @LLehner

v0.2.1

[0.2.1] - 2024-07-04

Minor

• Relaxing spatial-image package requirement #616

v0.2.0

[0.2.0] - 2024-07-03

Changed

• Using DataArray directly instead of the subclass SpatialImage (removed install constraint for the spatial_image package) #587
• Using DataTree directly instead of the subclass MultiscaleSpatialImage (removed install constraint for the multiscale_spatial_image package) #587

Major

• Added operation: to_polygons() @quentinblampey #560
• Extended rasterize() to support all the data types @quentinblampey #566
• Added operation: rasterize_bins() @quentinblampey #578
• Added operation: map_raster() to apply functions block-wise to raster data @ArneDefauw #588

Minor

• Removed pygeos dependency @omsai #545
• Channel coordinate annotations on images now persist through rasterize() @clwgg #544
• Added datasets module
• Extended get_values() to AnnData tables #579
• Added get_element_instances() (replaces _get_unique_label_values_as_index()) #582
• Added get_element_annotators(), retrieving the tables that annotate a particular SpatialElement #595

Fixed

• Preserve channel names of multi-scale images in transform (#379)

v0.2.0rc1

Update pyproject.toml

v0.2.0rc0

pre-release, changelog will appear in the release

v0.1.2

[0.1.2] - 2024-03-30

Minor

• Made get_channels() public.
• Added utils force_2d() to force 3D shapes to 2D (this is a temporary solution until .force_2d() is available in geopandas).

v0.1.1

[0.1.1] - 2024-03-28

Added

• Added method update_annotated_regions_metadata() which updates the regionvalue automatically from theregion_key` columns

Changed

• Renamed join_sdata_spatialelement_table to join_spatialelement_table, and made it work also without SpatialData objects.