iFox-mES Project

This repo contains code and data links supporting the manuscript:

Joint sequence and chromatin neural networks characterize the differential abilities of Forkhead transcription factors to engage inaccessible chromatin

Sonny Arora, Jianyu Yang, Tomohiko Akiyama, Daniela James, Alexis Morrissey, Thomas R. Blanda, Nitika Badjatia, William K.M. Lai, Minoru S.H. Ko, B. Franklin Pugh, Shaun Mahony

UCSC trackhub links

Trackhub: [http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&hubUrl=https://seqcode.github.io/iFox-mES/trackhub/hub.txt&position=chr2%3A79050828-79051027]

Neural network code

Code is described here