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seung-lab

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  1. connected-components-3d connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 400 45

  2. euclidean-distance-transform-3d euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 247 36

  3. kimimaro kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 143 25

  4. cloud-volume cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 140 48

  5. znn-release znn-release Public archive

    Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

    C++ 94 33

  6. DracoPy DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    C++ 89 26

Repositories

Showing 10 of 180 repositories
  • crackle Public

    3D dense segmentation compression codec based on crack codes.

    seung-lab/crackle’s past year of commit activity
    C++ 8 BSD-3-Clause 1 11 0 Updated Jan 30, 2025
  • cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    seung-lab/cloud-volume’s past year of commit activity
    Python 140 BSD-3-Clause 48 80 5 Updated Jan 30, 2025
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    seung-lab/neuroglancer’s past year of commit activity
    TypeScript 23 Apache-2.0 317 91 37 Updated Jan 29, 2025
  • igneous Public

    Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

    seung-lab/igneous’s past year of commit activity
    Python 45 GPL-3.0 18 23 4 Updated Jan 29, 2025
  • tem2ng Public

    Convert raw TEM microscope images into a neuroglancer volume.

    seung-lab/tem2ng’s past year of commit activity
    Python 1 BSD-3-Clause 0 2 0 Updated Jan 29, 2025
  • network-speed Public

    Application for testing network speed in a variety of configurations.

    seung-lab/network-speed’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jan 27, 2025
  • seuron Public Forked from wongwill86/air-tasks

    SEUnglab neuRON pipeline

    seung-lab/seuron’s past year of commit activity
    Python 7 MIT 6 1 1 Updated Jan 26, 2025
  • mapbuffer Public

    Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.

    seung-lab/mapbuffer’s past year of commit activity
    Python 8 BSD-3-Clause 0 2 0 Updated Jan 25, 2025
  • compressedseg Public Forked from janelia-flyem/compressedseg

    compressed_segmentation for Neuroglancer volumes. This is the PyPI package fork.

    seung-lab/compressedseg’s past year of commit activity
    C++ 4 Apache-2.0 3 2 0 Updated Jan 23, 2025
  • kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    seung-lab/kimimaro’s past year of commit activity
    C++ 143 GPL-3.0 25 18 0 Updated Jan 22, 2025
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