Skip to content
@shuzhao-li-lab

shuzhao-li-lab

README.md

Computational Metabolomics

The Shuzhao Li lab at The Jackson Laboratory for Genomic Medicine, Connecticut combine experimental approaches with computational algorithms that identify pathway patterns and integrate chemical reactions and biology. High-resolution mass spectrometry measures the metabolome, lipidome and small molecules of dietary, microbial and environmental origins. This information fills a major gap between genome and environment, revolutionizing biochemistry with broad applications to human health.

Pinned Loading

  1. asari asari Public

    asari, metabolomics data preprocessing

    Python 40 10

  2. khipu khipu Public

    a Python library for generalized, low-level annotation of MS metabolomics

    Python 7 2

  3. PythonCentricPipelineForMetabolomics PythonCentricPipelineForMetabolomics Public

    Python pipeline for metabolomics data preprocessing, QC, standardization and annotation

    Jupyter Notebook 8

  4. metDataModel metDataModel Public

    Data models for metabolomics, made to reuse

    Python 3 1

  5. consensus_serum_metabolome consensus_serum_metabolome Public

    Consensus serum metabolome by compiling large-scale public data

    Python 1

  6. MANA2024 MANA2024 Public

    Workshop Tutorial at MANA2024: Data Scientist on Jupyter

    Jupyter Notebook 1

Repositories

Showing 10 of 19 repositories
  • PythonCentricPipelineForMetabolomics Public

    Python pipeline for metabolomics data preprocessing, QC, standardization and annotation

    shuzhao-li-lab/PythonCentricPipelineForMetabolomics’s past year of commit activity
    Jupyter Notebook 8 0 19 0 Updated Oct 23, 2024
  • MANA2024 Public

    Workshop Tutorial at MANA2024: Data Scientist on Jupyter

    shuzhao-li-lab/MANA2024’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Oct 23, 2024
  • data Public

    Data deposited for demo

    shuzhao-li-lab/data’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Oct 22, 2024
  • consensus_serum_metabolome Public

    Consensus serum metabolome by compiling large-scale public data

    shuzhao-li-lab/consensus_serum_metabolome’s past year of commit activity
    Python 1 0 0 0 Updated Oct 20, 2024
  • asari Public

    asari, metabolomics data preprocessing

    shuzhao-li-lab/asari’s past year of commit activity
    Python 40 10 29 (1 issue needs help) 0 Updated Oct 4, 2024
  • mass2chem Public

    From mass to chemistry - common utilities in interpreting mass spectrometry data

    shuzhao-li-lab/mass2chem’s past year of commit activity
    Python 3 0 4 0 Updated Sep 26, 2024
  • asari_pcpfm_tutorials Public

    Tutorials for Asari and PCPFM

    shuzhao-li-lab/asari_pcpfm_tutorials’s past year of commit activity
    Jupyter Notebook 3 0 2 0 Updated Jul 20, 2024
  • khipu Public

    a Python library for generalized, low-level annotation of MS metabolomics

    shuzhao-li-lab/khipu’s past year of commit activity
    Python 7 2 22 0 Updated Jul 18, 2024
  • metDataModel Public

    Data models for metabolomics, made to reuse

    shuzhao-li-lab/metDataModel’s past year of commit activity
    Python 3 1 3 0 Updated Jul 14, 2024
  • ChemoselectiveDerivatizationTools Public
    shuzhao-li-lab/ChemoselectiveDerivatizationTools’s past year of commit activity
    Python 0 0 0 0 Updated May 23, 2024
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Most used topics

Loading…