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geertvangeest committed Jun 30, 2024
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Expand Up @@ -163,6 +163,7 @@ Below you'll find a curated list of **bioinformatics training material**. All ma
- [**Wes McKinney** wesm/pydata-book](https://github.com/wesm/pydata-book)
- [**Lino Galiana** linogaliana/python-datascientist](https://github.com/linogaliana/python-datascientist) | [website](https://pythonds.linogaliana.fr)
- [**Kevin Heavey** kevinheavey/modern-polars](https://github.com/kevinheavey/modern-polars/) | [website](https://kevinheavey.github.io/modern-polars/)
- [**Python Packages** py-pkgs/py-pkgs](https://github.com/py-pkgs/py-pkgs) | [website](https://py-pkgs.org)

### R

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- [**posit-conf-2023** posit-conf-2023/quarto-r](https://github.com/posit-conf-2023/quarto-r) | [website](https://posit-conf-2023.github.io/quarto-r/)
- [**Hamel Husain** hamelsmu/posit-python-quarto](https://github.com/hamelsmu/posit-python-quarto) | [website](https://bit.ly/pyquarto)
- [**Isabella Velásquez** ivelasq/2024-01-23_getting-started-with-report-writing-using-quarto](https://github.com/ivelasq/2024-01-23_getting-started-with-report-writing-using-quarto) | [website](https://ivelasq.quarto.pub/getting-started-with-report-writing-using-quarto/#/title-slide)
- [**Julien Roux** julien-roux/SIB_days_2024_workshop_EDI](https://github.com/julien-roux/SIB_days_2024_workshop_EDI/)

### Shiny

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- [**posit-conf-2023** posit-conf-2023/shiny-r-dashboard](https://github.com/posit-conf-2023/shiny-r-dashboard) | [website](https://posit-conf-2023.github.io/shiny-r-dashboard/)
- [**posit-conf-2023** posit-conf-2023/shiny-r-prod](https://github.com/posit-conf-2023/shiny-r-prod) | [website](https://posit-conf-2023.github.io/shiny-r-prod/)
- [**ThinkR** ThinkR-open/engineering-shiny-book](https://github.com/ThinkR-open/engineering-shiny-book) | [website](https://engineering-shiny.org)
- [**Ted Laderas** laderast/shinyowl](https://github.com/laderast/shinyowl/) | [website](https://laderast.github.io/shinyowl)

### Julia

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### Rust

- [**Google** google/comprehensive-rust](https://github.com/google/comprehensive-rust) | [website](https://google.github.io/comprehensive-rust/)
- [**The Rust Programming Language** rust-lang/rustlings](https://github.com/rust-lang/rustlings) | [website](https://rustlings.cool)

## Computational methods and pipelines

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- [**Data Carpentry** datacarpentry/genomics-workshop](https://github.com/datacarpentry/genomics-workshop) | [website](https://datacarpentry.org/genomics-workshop)
- [**Data Carpentry** datacarpentry/organization-genomics](https://github.com/datacarpentry/organization-genomics) | [website](https://datacarpentry.org/organization-genomics)
- [**The Gulbenkian Training Programme in Bioinformatics** GTPB/ELB19F](https://github.com/gtpb/ELB19F) | [website](https://gtpb.github.io/ELB19F/)
- [**The McDonnell Genome Institute** genome/bfx-workshop](https://github.com/genome/bfx-workshop)

### Next generation sequencing

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- [**UC Davis Bioinformatics Core Training Page** ucdavis-bioinformatics-training/2023-June-RNA-Seq-Analysis](https://github.com/ucdavis-bioinformatics-training/2023-June-RNA-Seq-Analysis)
- [**bioinformatics.ca** bioinformaticsdotca/RNA_2023](https://github.com/bioinformaticsdotca/RNA_2023)
- [**bioinformatics.ca** bioinformaticsdotca/PNA_2023](https://github.com/bioinformaticsdotca/PNA_2023)
- [**The Griffith Lab** griffithlab/rnabio.org](https://github.com/griffithlab/rnabio.org) | [website](http://rnabio.org)

### Single-cell sequencing

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- [**UC Davis Bioinformatics Core Training Page** ucdavis-bioinformatics-training/2022-December-Spatial-Transcriptomics](https://github.com/ucdavis-bioinformatics-training/2022-December-Spatial-Transcriptomics)
- [**Lukas Weber** lmweber/BestPracticesST](https://github.com/lmweber/BestPracticesST) | [website](https://lmweber.org/BestPracticesST/)
- [**NBIS - National Bioinformatics Infrastructure Sweden** NBISweden/workshop-spatial](https://github.com/NBISweden/workshop-spatial)
- [**SIB Swiss Institute of Bioinformatics** sib-swiss/spatial-transcriptomics-training](https://github.com/sib-swiss/spatial-transcriptomics-training/) | [website](https://sib-swiss.github.io/spatial-transcriptomics-training/)

### Long read sequencing

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- [**Edwin Thoen** EdwinTh/ADSwR](https://github.com/edwinth/ADSwR) | [website](https://edwinth.github.io/ADSwR/)
- [**tidyverse** tidyverse/datascience-box](https://github.com/tidyverse/datascience-box) | [website](https://datasciencebox.org)
- [**Modern Data Science with R** mdsr-book/mdsr-book.github.io](https://github.com/mdsr-book/mdsr-book.github.io)
- [**The Turing Way** the-turing-way/the-turing-way](https://github.com/the-turing-way/the-turing-way) | [website](http://the-turing-way.org)

### Statistics

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- [**Navid Nobani** Naviden/ML-intro-with-Python](https://github.com/Naviden/ML-intro-with-Python)
- [**Maxime Labonne** mlabonne/llm-course](https://github.com/mlabonne/llm-course) | [website](https://mlabonne.github.io/blog/)
- [**mlr-org** mlr-org/mlr3book](https://github.com/mlr-org/mlr3book) | [website](https://mlr3book.mlr-org.com)
- [**Inria** INRIA/scikit-learn-mooc](https://github.com/INRIA/scikit-learn-mooc) | [website](https://inria.github.io/scikit-learn-mooc)

## Others

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