R #28
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| name: R | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - branch-[0-9]+.[0-9]+ | |
| pull_request: | |
| schedule: | |
| # Run this workflow daily at 13:00 UTC | |
| - cron: "0 13 * * *" | |
| permissions: | |
| contents: read | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event_name }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| MLFLOW_HOME: /home/runner/work/mlflow/mlflow | |
| PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION: python | |
| jobs: | |
| r: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 120 | |
| if: github.event_name == 'push' || (github.event_name == 'schedule' && github.repository == 'mlflow-automation/mlflow') || (github.event_name == 'pull_request' && github.event.pull_request.draft == false) | |
| defaults: | |
| run: | |
| shell: bash --noprofile --norc -exo pipefail {0} | |
| working-directory: mlflow/R/mlflow | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| repository: ${{ github.event_name == 'schedule' && 'mlflow/mlflow' || null }} | |
| submodules: recursive | |
| - uses: ./.github/actions/setup-python | |
| - uses: ./.github/actions/setup-pyenv | |
| - uses: ./.github/actions/setup-java | |
| - uses: r-lib/actions/setup-r@v2 | |
| # This step dumps the current set of R dependencies and R version into files to be used | |
| # as a cache key when caching/restoring R dependencies. | |
| - name: Dump dependencies | |
| run: | | |
| Rscript -e 'source(".dump-r-dependencies.R", echo = TRUE)' | |
| - name: Get OS name | |
| id: os-name | |
| run: | | |
| # `os_name` will be like "Ubuntu-20.04.1-LTS" | |
| os_name=$(lsb_release -ds | sed 's/\s/-/g') | |
| echo "os-name=$os_name" >> $GITHUB_OUTPUT | |
| - name: Cache R packages | |
| uses: actions/cache@v3 | |
| continue-on-error: true | |
| # https://github.com/actions/cache/issues/810 | |
| env: | |
| SEGMENT_DOWNLOAD_TIMEOUT_MINS: 5 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| # We cache R dependencies based on a tuple of the current OS, the R version, and the list of | |
| # R dependencies | |
| key: ${{ steps.os-name.outputs.os-name }}-${{ hashFiles('mlflow/R/mlflow/R-version') }}-0-${{ hashFiles('mlflow/R/mlflow/depends.Rds') }} | |
| - name: Install dependencies | |
| run: | | |
| Rscript -e 'source(".install-deps.R", echo=TRUE)' | |
| - name: Set USE_R_DEVEL | |
| run: | | |
| if [ "$GITHUB_EVENT_NAME" = "schedule" ]; then | |
| USE_R_DEVEL=true | |
| elif [ "$GITHUB_EVENT_NAME" = "pull_request" ]; then | |
| # Use r-devel on a pull request targeted to a release branch | |
| USE_R_DEVEL=$([[ $GITHUB_BASE_REF =~ branch-[0-9]+\.[0-9]+$ ]] && echo true || echo false) | |
| else | |
| # Use r-devel on a push to a release branch | |
| USE_R_DEVEL=$([[ $GITHUB_REF_NAME =~ branch-[0-9]+\.[0-9]+$ ]] && echo true || echo false) | |
| fi | |
| echo "USE_R_DEVEL=$USE_R_DEVEL" >> $GITHUB_ENV | |
| - name: Build package | |
| run: | | |
| ./build-package.sh | |
| - name: Create test environment | |
| run: | | |
| pip install -e $(git rev-parse --show-toplevel) | |
| H2O_VERSION=$(Rscript -e "print(packageVersion('h2o'))" | grep -Eo '[0-9][0-9.]+') | |
| # test-keras-model.R fails with tensorflow>=2.13.0 | |
| pip install xgboost 'tensorflow<2.13.0' "h2o==$H2O_VERSION" | |
| Rscript -e 'source(".install-mlflow-r.R", echo=TRUE)' | |
| - name: Run tests | |
| env: | |
| LINTR_COMMENT_BOT: false | |
| run: | | |
| cd tests | |
| Rscript -e 'source("../.run-tests.R", echo=TRUE)' |